O2k-Publications: Topics: Difference between revisions

Revision as of 10:45, 11 November 2016

O2k-Publications: Topics

Mitochondria and cell research

Mitochondrial physiology: MiP areas

Pathological states

Alphabetical order

Stress conditions

Alphabetical order

Organisms

Mammals

Human
Pig
Horse
Bovines
Cat
Dog
Rabbit
Mouse
Rat
Guinea pig
Other mammals: including only mammals that are not listed as mammalian species above'.

Model organisms

Non-mammals

Birds (» Chicken)
Reptiles - turtles, lizards, snakes, crocodiles, alligators
Amphibians - frogs, toads, salamanders
Fishes - bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish
Hexapods - insects, springtails; » Drosophila
Crustaceans - crabs, shrimp, barnacles, etc.; » Artemia
Annelids - polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches
Molluscs - gastropods, cephalopods, bivalves
Nematodes » Caenorhabditis elegans
Other invertebrates - urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ...
Fungi - yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae
Plants
Protists - amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc.
Eubacteria - true bacteria, cyanobacteria, spirochetes
Archaea - archaebacteria

Tissues and cells

Tissues - alphabetical order

#	O2k-Publications	Comment	O2k	Total
1	Fat	White, brown, beige fat tissue	188	263
2	Genital		92	123
3	Heart		724	936
4	Kidney		150	183
5	Liver		646	841
6	Lung;Gill		59	82
7	Nervous system		606	732
8	Skeletal muscle		1106	1370

Cell types - alphabetical order

#	O2k-Publications	O2k	Total
1	Blood cells	254	320
2	Endothelial;epithelial;mesothelial cell	259	294
3	Fibroblast	207	271
4	Islet cell;pancreas;thymus	55	67
5	Lymphocyte	58	76
6	Platelet	121	151
7	Stem cells	36	48

Cell lines - alphabetical order

#	O2k-Publications	O2k	Total
1	CHO	14	16
2	HEK	95	116
3	HeLa	38	55
4	Neuroblastoma	43	50
5	HUVEC	19	22
6	Macrophage-derived cell lines	26	37
7	Other cells and cell lines	292	338

Preparations

Intact organism •• Intact organ •• Intact cells •• Permeabilized cells •• Permeabilized tissue •• Homogenate •• Isolated mitochondria •• SMP •• Chloroplasts •• Enzyme •• Oxidase and biochemical oxidation

Enzymes

Alphabetical order

•• Adenine nucleotide translocase •• Complex I •• Complex II;succinate dehydrogenase •• Complex III •• Complex IV;cytochrome c oxidase •• Complex V;ATP synthase •• Inner mt-membrane transporter •• Marker enzyme •• Supercomplex •• TCA cycle and matrix dehydrogenases •• Uncoupling protein

Regulation

Alphabetical order

•• ADP •• ATP production •• Aerobic glycolysis •• Amino acid •• Calcium •• Coupling efficiency;uncoupling •• Cyt c •• Fatty acid •• Flux control •• Inhibitor •• Ion;substrate transport •• mt-Membrane potential •• Oxygen kinetics •• Q-junction effect •• Redox state •• Substrate •• Temperature •• Threshold;excess capacity •• Uncoupler

Coupling control states

#	O2k-Publications	MitoPedia: Pathway control states	Comment	O2k	Total
1	P	OXPHOS capacity	Oxidative phosphorylation capacity, saturating [ADP]	2867	3096
2	R	ROUTINE respiration	Physiological state, intact cells	894	981
3	E	Electron transfer system capacity	Maximal noncoupled respiration	0	0
4	L	LEAK respiration	Resting state, non-phosphorylating respiration	2613	2772

Pathway control states

#	O2k-Publications	MitoPedia: Pathway control states	Comment	O2k	Total
1	F	F-pathway control state	Fatty acid oxidation, level 5	609	753
2	N	N-pathway control state	NADH-linked, level 4	2475	2623
3	S	S-pathway control state	Succinate-linked, level 3	1686	1794
4	Gp	Gp-pathway control state	Glycerophosphate-linked, level 3	157	183
5	DQ		Duorquinol-linked, level 2	26	31
6	CIV	Complex IV single step	Ascorbate & TMPD, level 1	702	730
7	NS	NS-pathway control state	Convergent CI- and CII-linked electron flow to the Q-junction	1580	1637
8	Other			133	149
9	ROX	Residual oxygen consumption	includes non-mitochondrial respiration	1521	1573

MiPMap combinations - examples

Examples for specific combinations

O2k-Publications: Human skeletal muscle •• O2k-Publications: Human heart •• O2k-Publications: Skeletal muscle - human vs mouse

Browse data

Browse O2k-Publications

O2k-Manuals and protocols and specific instrumental applications

O2k-Manual •• Instruments;methods •• TIP2k •• O2k-Fluorometry•• O2k-Fluorometry - Fluorophores•• TPP + ISE-Module •• O2k-pH ISE-Module •• Theoretical background •• O2k-Protocols •• PBI Shredder

Twin-Flow respirometry •• Separate DatLab applications

@@ Line 132: / Line 132: @@
 | {{#ask:[[Category:Publications]] [[Tissue and cell::Kidney]] |format=count}}
 |-
+| 5
+| [[O2k-Publications: Liver|Liver]]
+| style="text-align:left"|
+| style="text-align:left"|
+| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Tissue and cell::Liver]] |format=count}}
+| {{#ask:[[Category:Publications]] [[Tissue and cell::Liver]] |format=count}}
+|-
+| 6
+| [[O2k-Publications: Lung; gill|Lung;Gill]]
+| style="text-align:left"|
+| style="text-align:left"|
+| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Tissue and cell::Lung;gill]] |format=count}}
+| {{#ask:[[Category:Publications]] [[Tissue and cell::Lung;gill]] |format=count}}
+|-
+| 7
+| [[O2k-Publications: Nervous system|Nervous system]]
+| style="text-align:left"|
+| style="text-align:left"|
+| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Tissue and cell::Nervous system]] |format=count}}
+| {{#ask:[[Category:Publications]] [[Tissue and cell::Nervous system]] |format=count}}
+|-
+| 8
+| [[O2k-Publications: Skeletal muscle|Skeletal muscle]]
+| style="text-align:left"|
+| style="text-align:left"|
+| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Tissue and cell::Skeletal muscle]] |format=count}}
+| {{#ask:[[Category:Publications]] [[Tissue and cell::Skeletal muscle]] |format=count}}
+|-
 |}
-•• [[O2k-Publications: Liver|Liver]]
-•• [[O2k-Publications: Lung; gill|Lung;Gill]]
-•• [[O2k-Publications: Nervous system|Nervous system]]
-•• [[O2k-Publications: Skeletal muscle|Skeletal muscle]]
 :: '''Cell types''' - ''alphabetical order''
-•• [[O2k-Publications: Blood cells|Blood cells]]
+::::{| class="wikitable sortable" style="text-align:center"
-•• [[O2k-Publications: Endothelial; Epithelial; Mesothelial Cell|Endothelial;epithelial;mesothelial cell]]
+! #
-•• [[O2k-Publications:  Fibroblast|Fibroblast]]
+! O2k-Publications
-•• [[O2k-Publications: Islet Cell; Pancreas; Thymus|Islet cell;pancreas;thymus]]
+! MitoPedia:
-•• [[O2k-Publications: Lymphocyte|Lymphocyte]]
+! Comment
-•• [[O2k-Publications: Platelet|Platelet]]
+! O2k
-•• [[O2k-Publications: Stem  cells|Stem cells]]
+! Total
+|-
+| 1
+| [[O2k-Publications: Blood cells|Blood cells]]
+| style="text-align:left"|
+| style="text-align:left"|
+| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Tissue and cell::Blood cells]] |format=count}}
+| {{#ask:[[Category:Publications]] [[Tissue and cell::Blood cells]] |format=count}}
+|-
+| 2
+| [[O2k-Publications: Endothelial; Epithelial; Mesothelial Cell|Endothelial;epithelial;mesothelial cell]]
+| style="text-align:left"|
+| style="text-align:left"|
+| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Tissue and cell::Endothelial;epithelial;mesothelial cell]] |format=count}}
+| {{#ask:[[Category:Publications]] [[Tissue and cell::Endothelial;epithelial;mesothelial cell]] |format=count}}
+|-
+| 3
+| [[O2k-Publications:  Fibroblast|Fibroblast]]
+| style="text-align:left"|
+| style="text-align:left"|
+| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Tissue and cell::Fibroblast]] |format=count}}
+| {{#ask:[[Category:Publications]] [[Tissue and cell::Fibroblast]] |format=count}}
+|-
+| 4
+| [[O2k-Publications: Islet Cell; Pancreas; Thymus|Islet cell;pancreas;thymus]]
+| style="text-align:left"|
+| style="text-align:left"|
+| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Tissue and cell::Islet cell;pancreas;thymus]] |format=count}}
+| {{#ask:[[Category:Publications]] [[Tissue and cell::Islet cell;pancreas;thymus]] |format=count}}
+|-
+| 5
+| [[O2k-Publications: Lymphocyte|Lymphocyte]]
+| style="text-align:left"|
+| style="text-align:left"|
+| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Tissue and cell::Lymphocyte]] |format=count}}
+| {{#ask:[[Category:Publications]] [[Tissue and cell::Lymphocyte]] |format=count}}
+|-
+| 6
+| [[O2k-Publications: Platelet|Platelet]]
+| style="text-align:left"|
+| style="text-align:left"|
+| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Tissue and cell::Platelet]] |format=count}}
+| {{#ask:[[Category:Publications]] [[Tissue and cell::Platelet]] |format=count}}
+|-
+| 7
+| [[O2k-Publications: Stem  cells|Stem cells]]
+| style="text-align:left"|
+| style="text-align:left"|
+| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Tissue and cell::Stem cells]] |format=count}}
+| {{#ask:[[Category:Publications]] [[Tissue and cell::Stem cells]] |format=count}}
+|-
+|}
 :: '''Cell lines''' - ''alphabetical order''
-•• [[O2k-Publications: CHO|CHO]]
+::::{| class="wikitable sortable" style="text-align:center"
-•• [[O2k-Publications: HEK|HEK]]
+! #
-•• [[O2k-Publications: HeLa|HeLa]]
+! O2k-Publications
-•• [[O2k-Publications:  Neuroblastoma|Neuroblastoma]]
+! MitoPedia:
-•• [[O2k-Publications: HUVEC|HUVEC]]
+! Comment
-•• [[O2k-Publications: Macrophage-derived cell lines|Macrophage-derived  cell lines]]
+! O2k
-* [[O2k-Publications: Other cell lines|Other cells and cell lines]]
+! Total
+|-
+| 1
+| [[O2k-Publications: CHO|CHO]]
+| style="text-align:left"|
+| style="text-align:left"|
+| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Tissue and cell::CHO]] |format=count}}
+| {{#ask:[[Category:Publications]] [[Tissue and cell::CHO]] |format=count}}
+|-
+| 2
+| [[O2k-Publications: HEK|HEK]]
+| style="text-align:left"|
+| style="text-align:left"|
+| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Tissue and cell::HEK]] |format=count}}
+| {{#ask:[[Category:Publications]] [[Tissue and cell::HEK]] |format=count}}
+|-
+| 3
+| [[O2k-Publications: HeLa|HeLa]]
+| style="text-align:left"|
+| style="text-align:left"|
+| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Tissue and cell::HeLa]] |format=count}}
+| {{#ask:[[Category:Publications]] [[Tissue and cell::HeLa]] |format=count}}
+|-
+| 4
+| [[O2k-Publications:  Neuroblastoma|Neuroblastoma]]
+| style="text-align:left"|
+| style="text-align:left"|
+| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Tissue and cell::Neuroblastoma]] |format=count}}
+| {{#ask:[[Category:Publications]] [[Tissue and cell::Neuroblastoma]] |format=count}}
+|-
+| 5
+| [[O2k-Publications: HUVEC|HUVEC]]
+| style="text-align:left"|
+| style="text-align:left"|
+| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Tissue and cell::HUVEC]] |format=count}}
+| {{#ask:[[Category:Publications]] [[Tissue and cell::HUVEC]] |format=count}}
+|-
+| 6
+| [[O2k-Publications: Macrophage-derived cell lines|Macrophage-derived cell lines]]
+| style="text-align:left"|
+| style="text-align:left"|
+| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Tissue and cell::Macrophage-derived]] |format=count}}
+| {{#ask:[[Category:Publications]] [[Tissue and cell::Macrophage-derived]] |format=count}}
+|-
+| 7
+| [[O2k-Publications: Other cell lines|Other cells and cell lines]]
+| style="text-align:left"|
+| style="text-align:left"|
+| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Tissue and cell::Other cell lines]] |format=count}}
+| {{#ask:[[Category:Publications]] [[Tissue and cell::Other cell lines]] |format=count}}
+|-
+|}