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Difference between revisions of "Test"

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'''Table 8. Terms, symbols, and units.''' SI base units are used, except for the liter [L = dm<sup>3</sup>]. SI refers to ref. [[Bureau International des Poids et Mesures 2019 The International System of Units (SI) |[11]]].
'''Table 8. Terms, symbols, and units.''' SI base units are used, except for the liter [L = dm<sup>3</sup>]. SI refers to ref. [[Bureau International des Poids et Mesures 2019 The International System of Units (SI) |[11]]].



Revision as of 14:09, 16 September 2020


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Test

Description

Descr

Abbreviation: Abbr

Reference: Ref





MitoPedia O2k and high-resolution respirometry: O2k hardware, O2k-Open Support, O2k-FluoRespirometry 



Table 8. Terms, symbols, and units. SI base units are used, except for the liter [L = dm3]. SI refers to ref. [11].

Term Link to MitoPedia term Symbol Unit Links and comments
alternative quinol oxidase] Alternative oxidase AOX - Fig. 1B
adenosine monophosphate AMP AMP - 2 ADP ↔ ATP+AMP
adenosine diphosphate ADP ADP - Tab. 1; Fig. 1, 2, 5
adenosine triphosphate ATP ATP - Fig. 2, 5
adenylates Adenylates AMP, ADP, ATP - Section 2.5.1
amount of substance X Amount nX or n(X) [mol] SI
ATP yield per O2 ATP yield YP»/O2 1 P»/O2 ratio measured in any respiratory state
catabolic reaction Respiration k - Fig. 1, 3
catabolic rate of respiration Respiration JkO2; IkO2 varies Fig. 1, 3; see flux J and flow I
cell count Count Nce [x] Tab. 4; Fig. 5; see number of cells
cell mass Mass mce [kg] Tab. 5; Fig. 5
cell mass, mass per cell Mass MNce [kg∙x­-1] Tab. 5; Fig. 5
cell-mass concentration Concentration Cmce [kg∙L­-1] see Cms: Tab. 4; Cmce = mceV-1
cell-count concentration Concentration Cce [x∙L­-1] Tab. 4; Cce = NceV-1
cell viability index Cell viability VI - VI = NvceNce­-1 = 1 - NdceNce­-1
charge number of entity B Charge number zB 1 Tab. 6; zO2 = 4 [[[Cohen 2008 IUPAC Green Book |24]]]
Complexes I to IV Complex I CI to CIV - respiratory ET Complexes are redox proton pumps; Fig. 1B; F1FO-ATPase is not a redox proton pump of the ETS, hence the term CV is not recommended
concentration of X, count Concentration CX = NX-1 [x∙L-1] Tab. 4 (number concentration [[[Cohen 2008 IUPAC Green Book |24]]])
concentration of B, amount Concentration cB = NB-1 [mol∙L­-1] SI: amount of substance concentration [[[Cohen 2008 IUPAC Green Book |24]]]
concentration of O2, amount Concentration cO2 = nO2-1 [mol∙L­-1] Box 2; [O2]
count format Format N [x] Tab. 4, 5; Fig. 5
count of X Count NX [x] SI; see number of entities X
coupling control state Coupling control state CCS - Section 2.4.1
dead cells Cell viability dce - Tab. 5
electrical format Format e [C] Tab. 6
electron transfer, state Electron transfer pathway ET - Tab. 1; Fig. 2B, 4 (State 3u)
electron transfer system Electron transfer pathway ETS - Fig. 2B, 4 (electron transport chain)
entity Entity X [x] single countable object; Tab. 4
ET capacity ET capacity E varies rate; Tab. 1; Fig. 2
ET-excess capacity ET capacity E-P varies Fig. 2
flow, for O2 Flow IO2 [mol∙s-­1] system-related extensive quantity; Fig. 5
flux, for O2 Flux JO2 varies size-specific quantity; Fig. 5
inorganic phosphate Phosphate Pi - Fig. 1C
inorganic phosphate carrier Phosphate carrier PiC - Fig. 1C
isolated mitochondria Isolated mitochondria imt - Tab. 5
living cells Living cells ce - Tab. 5 (intact cells)
LEAK-state LEAK-state LEAK - Tab. 1; Fig. 2 (compare State 4)
LEAK respiration LEAK respiration L varies rate; Tab. 1; Fig. 2
mass concentration of sample s Concentration Cms [kg∙L-1] Tab. 4
mass format Format m [kg] Tab. 4
mass of diluted sample Mass ms [kg] SI: mass of pure sample mS
mass per single object Mass MNX [kg∙x­1] Fig. 5; Tab. 4; SI: m(X); compare molar mass M(X)
mass, dry mass Mass md [kg] Fig. 5 (dry weight)
mass, wet mass Mass mw [kg] Fig. 5 (wet weight)
MITOCARTA MITOCARTA
MitoPedia MitoPedia
mitochondria or mitochondrial Mitochondria mt - Box 1
mitochondrial DNA Mitochondria mtDNA - Box 1
mitochondrial concentration Concentration CmtE = mtEV-1 [mtEU∙L-1] Tab. 4
mitochondrial content Mitochondria mtENX [mtEU∙x­-1] mtENX = mtENX-1; Tab. 4
mitochondrial density Density DmtE=mtEms-1 [mtEU∙kg­-1] tissue-mass specific mt-density; Tab. 4
mitochondrial elementary marker Mitochondria mtE [mtEU] quantity of mt-marker; Tab. 4
mitochondrial elementary unit Mitochondria mtEU varies specific units for mt-marker; Tab. 4
mitochondrial inner membrane Mitochondrial inner membrane mtIM - Fig. 1; Box 1 (MIM)
mitochondrial outer membrane Mitochondrial outer membrane mtOM - Fig. 1; Box 1 (MIM)
mitochondrial recovery Mitochondrial recovery YmtE 1 fraction of mtE recovered from the tissue sample in imt-stock
mitochondrial yield Mitochondrial yield YmtE/ms [mtEU∙kg-1] mt-yield in imt-stock per mass of tissue sample; YmtE/ms=YmtEDmtE
molar format Format n [mol] Tab. 6
molar mass Molar mass MB [kg∙mol-1] compare MNB [kg∙x-1]; SI M(X)
negative Protonmotive force neg - Fig. 4
number of cells Count Nce [x] total cell count of living cells, Nce = Nvce + Ndce; Tab. 4, 5
number of dead cells Cell viability Ndce [x] non-viable cell count, loss of plasma membrane barrier function; Tab. 5
number of entities B Count NB [x] Tab. 4 [[[Cohen 2008 IUPAC Green Book |24]]]
number of entities X; count Count NX [x] ‘count’ is an SI quantity [11], but the counting unit [x] is not in the SI [95]; Tab. 4; Fig. 5
number of viable cells Cell viability Nvce [x] viable cell count, intact plasma membrane barrier function; Tab. 5
organisms Organism org - Tab. 5
oxidative phosphorylation Oxidative phosphorylation OXPHOS - Tab. 1
OXPHOS-state OXPHOS-state OXPHOS - Tab. 1; Fig. 2; OXPHOS-state distinguished from the process OXPHOS (State 3 at kinetically-saturating [ADP] and [Pi])
OXPHOS capacity OXPHOS capacity P varies rate; Tab. 1; Fig. 2
oxygen concentration Oxygen concentration cO2 = nO2-1 [mol∙L­-1] [O2]; Section 3.2
oxygen flux, in reaction r Oxygen flux JrO2 varies Overview
pathway control state Pathway control state PCS - Section 2.2
permeability transition Permeability transition mtPT - Fig. 3; Section 2.4.3 (MPT)
permeabilized cells Permeabilized cells pce - experimental permeabilization of plasma membrane; Tab. 5
permeabilized muscle fibers Permeabilized muscle fibers pfi - Tab. 5
permeabilized tissue Permeabilized tissue pti - Tab. 5
phosphorylation of ADP to ATP Oxidative phosphorylation - Tab. 1, 2; Fig. 1, 4
P»/O2 ratio Oxidative phosphorylation P»/O2 1 mechanistic YP»/O2, calculated from pump stoichiometries; Fig. 1c
positive positive Protonmotive force - Fig. 4
proton in the neg compartment Protonmotive force H+neg [x] Fig. 4
proton in the pos compartment proton in the positive compartment H+pos [x] Fig. 4
protonmotive force protonmotive force pmF [V] Overview; Tab. 1; Fig 1a, 2, 4
rate in ET-state Electron transfer pathway E varies ET capacity; Tab. 1; Fig. 2, 4
rate in LEAK-state LEAK L varies Tab. 1: L(n), L(T), L(Omy); Fig. 2, 4
rate in OXPHOS-state OXPHOS P varies OXPHOS capacity; Tab.1; Fig. 2, 4
rate in ROX state Residual oxygen consumption Rox varies Overview; Tab. 1
residual oxygen consumption Residual oxygen consumption ROX; Rox - state ROX; rate Rox; Tab. 1
respiration Respiration JrO2 varies rate of reaction r; Overview
respiratory supercomplex Supercomplex SCInIIInIVn - supramolecular assemblies with variable copy numbers (n) of CI, CIII and CIV; Box 1
sample Sample s - diluted sample; Tab. 4, 5
substrate concentration at half-maximal rate Concentration c50 [mol∙L­-1] Section 2.1.2
substrate-uncoupler-inhibitor-titration Substrate-uncoupler-inhibitor-titration SUIT - Section 2.2
tissue homogenate Tissue homogenate thom - Tab. 5
viable cells Viable cells vce - Tab. 5
volume of chamber Volume V [L] Tab. 4, 7; Fig. 5
volume format Format V [L] Tab. 6
volume of sample s Volume Vs [L] Tab. 5; Fig. 5


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