https://wiki.oroboros.at/index.php?title=Talk:Oxygen_calibration_-_DatLab&feed=atom&action=historyTalk:Oxygen calibration - DatLab - Revision history2024-03-28T21:47:31ZRevision history for this page on the wikiMediaWiki 1.36.1https://wiki.oroboros.at/index.php?title=Talk:Oxygen_calibration_-_DatLab&diff=224242&oldid=prevSpitzer Gudrun at 10:27, 3 February 20222022-02-03T10:27:10Z<p></p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 10:27, 3 February 2022</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [[Oxygen_solubility_factor|Oxygen solubility factor]]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [[Oxygen_solubility_factor|Oxygen solubility factor]]</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [[Oxygen_flux_-_instrumental_background|Oxygen flux - instrumental background]]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [[Oxygen_flux_-_instrumental_background|Oxygen flux - instrumental background]]</div></td></tr>
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</table>Spitzer Gudrunhttps://wiki.oroboros.at/index.php?title=Talk:Oxygen_calibration_-_DatLab&diff=223031&oldid=prevSpitzer Gudrun at 08:10, 22 December 20212021-12-22T08:10:24Z<p></p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 08:10, 22 December 2021</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l16">Line 16:</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::* Use the air calibration protocol as a guide to generate R1. Main steps:</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::* Use the air calibration protocol as a guide to generate R1. Main steps:</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::::* Record the oxygen signal while the chamber is filled with medium and the stopper is in the [[Open_chamber|'open chamber']] position.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::::* Record the oxygen signal while the chamber is filled with medium and the stopper is in the [[Open_chamber|'open chamber']] position.</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>::::* After equilibration the [[<del style="font-weight: bold; text-decoration: none;">Raw_signal_-_DatLab</del>|raw signal]] from the POS should be stable and around 2 (acceptable between 1 and 3).</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>::::* After equilibration the [[<ins style="font-weight: bold; text-decoration: none;">Raw_signal_of_the_oxygen_sensor</ins>|raw signal]] from the POS should be stable and around 2 (acceptable between 1 and 3).</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><!--should be stable and the [[<del style="font-weight: bold; text-decoration: none;">Raw_signal_-_DatLab</del>|raw signal]] between 1 and 3. The O2 slope neg. (red trace) should be within ± 2 (± 4 is acceptable) pmol∙s<sup>-1</sup>∙mL<sup>-1</sup>.--></div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><!--should be stable and the [[<ins style="font-weight: bold; text-decoration: none;">Raw_signal_of_the_oxygen_sensor</ins>|raw signal]] between 1 and 3. The O2 slope neg. (red trace) should be within ± 2 (± 4 is acceptable) pmol∙s<sup>-1</sup>∙mL<sup>-1</sup>.--></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::::* Set a mark and call it R1 (named automatically when the DatLab protocol is used).</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::::* Set a mark and call it R1 (named automatically when the DatLab protocol is used).</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[File:DL7_whole_window_calib_yellow_arrows2.png|thumb|right|800px|O2 calibration indicator fields in DatLab 7]]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[File:DL7_whole_window_calib_yellow_arrows2.png|thumb|right|800px|O2 calibration indicator fields in DatLab 7]]</div></td></tr>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::* Use the 'air and zero' calibration protocol as a guide to generate R0. Main steps:</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::* Use the 'air and zero' calibration protocol as a guide to generate R0. Main steps:</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::::* In the [[Closed_chamber|closed chamber]] remove the oxygen from the medium (chemically by adding sodium dithionite or biologically by adding oxygen consuming sample).</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::::* In the [[Closed_chamber|closed chamber]] remove the oxygen from the medium (chemically by adding sodium dithionite or biologically by adding oxygen consuming sample).</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>::::* The [[<del style="font-weight: bold; text-decoration: none;">Raw_signal_-_DatLab</del>|raw signal]] from the POS should be stable and < 2% of the signal at air saturation (up to 5% is acceptable).</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>::::* The [[<ins style="font-weight: bold; text-decoration: none;">Raw_signal_of_the_oxygen_sensor</ins>|raw signal]] from the POS should be stable and < 2% of the signal at air saturation (up to 5% is acceptable).</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::::* Set a mark and call it R0 (named automatically during the DatLab protocol).</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::::* Set a mark and call it R0 (named automatically during the DatLab protocol).</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::; Instrumental O2 background test</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::; Instrumental O2 background test</div></td></tr>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::* Values computed from the input sources (FM, R1 and R0) above are displayed but cannot be edited in this section.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::* Values computed from the input sources (FM, R1 and R0) above are displayed but cannot be edited in this section.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::* Keep an eye on the value '<span style="color:#C55A11">O<sub>2</sub> slope neg.</span>' (orange arrow). It should be within the range of -1 to 1 pmol∙s<sup>-1</sup>∙mL<sup>-1</sup> as a quality criterion.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::* Keep an eye on the value '<span style="color:#C55A11">O<sub>2</sub> slope neg.</span>' (orange arrow). It should be within the range of -1 to 1 pmol∙s<sup>-1</sup>∙mL<sup>-1</sup> as a quality criterion.</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>::* Click 'Show details' for a more detailed compilation of values used to compute the oxygen concentration from the raw signal received from the POS sensor.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>::* Click 'Show details' for a more detailed compilation of values used to compute the oxygen concentration from the <ins style="font-weight: bold; text-decoration: none;">[[Raw_signal_of_the_oxygen_sensor|</ins>raw signal<ins style="font-weight: bold; text-decoration: none;">]] </ins>received from the POS sensor.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::* 'Copy to clipboard' for data analysis outside of DatLab8. We recommend to use Excel templates provided together with the O2k instrument for long-time record of R1 and R0 to observe sudden changes as hints for errors.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::* 'Copy to clipboard' for data analysis outside of DatLab8. We recommend to use Excel templates provided together with the O2k instrument for long-time record of R1 and R0 to observe sudden changes as hints for errors.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>:::: A field to edit the sensor number (not recommended).</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>:::: A field to edit the sensor number (not recommended).</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::; Details</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::; Details</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>:::: This tab next to 'Signal' in the third line shows a more detailed compilation of values used to compute the oxygen concentration from the raw signal received from the POS sensor.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>:::: This tab next to 'Signal' in the third line shows a more detailed compilation of values used to compute the oxygen concentration from the <ins style="font-weight: bold; text-decoration: none;">[[Raw_signal_of_the_oxygen_sensor|</ins>raw signal<ins style="font-weight: bold; text-decoration: none;">]] </ins>received from the POS sensor.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::; Reset to system default</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::; Reset to system default</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>:::: This option provides values as a starting point. They are not intended for use in experiments, they will show an arbitrary O2 concentration, but it is enough to see the blue line in the graph and perform O2 calibration.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>:::: This option provides values as a starting point. They are not intended for use in experiments, they will show an arbitrary O2 concentration, but it is enough to see the blue line in the graph and perform O2 calibration.</div></td></tr>
</table>Spitzer Gudrunhttps://wiki.oroboros.at/index.php?title=Talk:Oxygen_calibration_-_DatLab&diff=223011&oldid=prevSpitzer Gudrun at 10:40, 21 December 20212021-12-21T10:40:51Z<p></p>
<table style="background-color: #fff; color: #202122;" data-mw="interface">
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 10:40, 21 December 2021</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=== Section 'O2 calibration values' ===</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=== Section 'O2 calibration values' ===</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::* Values computed from the input sources (FM, R1 and R0) above are displayed but cannot be edited in this section.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::* Values computed from the input sources (FM, R1 and R0) above are displayed but cannot be edited in this section.</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>::* Keep an eye on the value 'O<sub>2</sub> slope neg.'(orange arrow). It should be within the range of -1 to 1 pmol∙s<sup>-1</sup>∙mL<sup>-1</sup> as a quality criterion.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>::* Keep an eye on the value '<ins style="font-weight: bold; text-decoration: none;"><span style="color:#C55A11"></ins>O<sub>2</sub> slope neg.<ins style="font-weight: bold; text-decoration: none;"></span></ins>' (orange arrow). It should be within the range of -1 to 1 pmol∙s<sup>-1</sup>∙mL<sup>-1</sup> as a quality criterion.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::* Click 'Show details' for a more detailed compilation of values used to compute the oxygen concentration from the raw signal received from the POS sensor.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::* Click 'Show details' for a more detailed compilation of values used to compute the oxygen concentration from the raw signal received from the POS sensor.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::* 'Copy to clipboard' for data analysis outside of DatLab8. We recommend to use Excel templates provided together with the O2k instrument for long-time record of R1 and R0 to observe sudden changes as hints for errors.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::* 'Copy to clipboard' for data analysis outside of DatLab8. We recommend to use Excel templates provided together with the O2k instrument for long-time record of R1 and R0 to observe sudden changes as hints for errors.</div></td></tr>
<tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l124">Line 124:</td>
<td colspan="2" class="diff-lineno">Line 124:</td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=== Calibration source 'Active file' ===</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=== Calibration source 'Active file' ===</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>As soon as you start to select a mark for air or zero calibration, the field 'Calibration source' changes to 'Active file'. It is recommended to generate calibration data guided by the DatLab Protocol ('Protocols > A: Run Protocol / Set O2 limit Y > Instrumental > O2 calibration > O2 calibration air' or 'O2 calibration air and zero'). Following the SOPs explained therein, the marks will be named automatically. Select the marks from the drop-down menu for R1 and R0 and confirm with 'Calibrate and copy to clipboard'.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>As soon as you start to select a mark for air or zero calibration, the field 'Calibration source' changes to 'Active file'. It is recommended to generate calibration data guided by the DatLab Protocol ('Protocols > A: Run Protocol / Set O2 limit Y > Instrumental > O2 calibration > O2 calibration air' or 'O2 calibration air and zero'). Following the SOPs explained therein, the marks will be named automatically. Select the marks from the drop-down menu for R1 and R0 and confirm with 'Calibrate and copy to clipboard'.</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>::* Keep an eye on the value 'O<sub>2</sub> slope neg.' (orange arrow). It should be within the range of -1 to 1 pmol∙s<sup>-1</sup>∙mL<sup>-1</sup> as a quality criterion.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>::* Keep an eye on the value '<ins style="font-weight: bold; text-decoration: none;"><span style="color:#C55A11"></ins>O<sub>2</sub> slope neg.<ins style="font-weight: bold; text-decoration: none;"></span></ins>' (orange arrow). It should be within the range of -1 to 1 pmol∙s<sup>-1</sup>∙mL<sup>-1</sup> as a quality criterion.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::* If only R1 was recorded during the daily calibration routine, R0 will be taken from the latest past calibration (see section Calibration source 'default').</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::* If only R1 was recorded during the daily calibration routine, R0 will be taken from the latest past calibration (see section Calibration source 'default').</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
</table>Spitzer Gudrunhttps://wiki.oroboros.at/index.php?title=Talk:Oxygen_calibration_-_DatLab&diff=223010&oldid=prevSpitzer Gudrun at 10:35, 21 December 20212021-12-21T10:35:09Z<p></p>
<table style="background-color: #fff; color: #202122;" data-mw="interface">
<col class="diff-marker" />
<col class="diff-content" />
<col class="diff-marker" />
<col class="diff-content" />
<tr class="diff-title" lang="en">
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 10:35, 21 December 2021</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l124">Line 124:</td>
<td colspan="2" class="diff-lineno">Line 124:</td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=== Calibration source 'Active file' ===</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=== Calibration source 'Active file' ===</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>As soon as you start to select a mark for air or zero calibration, the field 'Calibration source' changes to 'Active file'. It is recommended to generate calibration data guided by the DatLab Protocol ('Protocols > A: Run Protocol / Set O2 limit Y > Instrumental > O2 calibration > O2 calibration air' or 'O2 calibration air and zero'). Following the SOPs explained therein, the marks will be named automatically. Select the marks from the drop-down menu for R1 and R0 and confirm with 'Calibrate and copy to clipboard'.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>As soon as you start to select a mark for air or zero calibration, the field 'Calibration source' changes to 'Active file'. It is recommended to generate calibration data guided by the DatLab Protocol ('Protocols > A: Run Protocol / Set O2 limit Y > Instrumental > O2 calibration > O2 calibration air' or 'O2 calibration air and zero'). Following the SOPs explained therein, the marks will be named automatically. Select the marks from the drop-down menu for R1 and R0 and confirm with 'Calibrate and copy to clipboard'.</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>::* Keep an eye on the value 'O<sub>2</sub> slope neg.'. It should be within the range of -1 to 1 pmol∙s<sup>-1</sup>∙mL<sup>-1</sup> as a quality criterion.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>::* Keep an eye on the value 'O<sub>2</sub> slope neg.' <ins style="font-weight: bold; text-decoration: none;">(orange arrow)</ins>. It should be within the range of -1 to 1 pmol∙s<sup>-1</sup>∙mL<sup>-1</sup> as a quality criterion.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::* If only R1 was recorded during the daily calibration routine, R0 will be taken from the latest past calibration (see section Calibration source 'default').</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::* If only R1 was recorded during the daily calibration routine, R0 will be taken from the latest past calibration (see section Calibration source 'default').</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
</table>Spitzer Gudrunhttps://wiki.oroboros.at/index.php?title=Talk:Oxygen_calibration_-_DatLab&diff=223008&oldid=prevSpitzer Gudrun at 10:31, 21 December 20212021-12-21T10:31:30Z<p></p>
<table style="background-color: #fff; color: #202122;" data-mw="interface">
<col class="diff-marker" />
<col class="diff-content" />
<col class="diff-marker" />
<col class="diff-content" />
<tr class="diff-title" lang="en">
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 10:31, 21 December 2021</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l81">Line 81:</td>
<td colspan="2" class="diff-lineno">Line 81:</td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=== Section 'O2 calibration values' ===</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=== Section 'O2 calibration values' ===</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::* Values computed from the input sources (FM, R1 and R0) above are displayed but cannot be edited in this section.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::* Values computed from the input sources (FM, R1 and R0) above are displayed but cannot be edited in this section.</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>::* Keep an eye on the value 'O<sub>2</sub> slope neg.'. It should be within the range of -1 to 1 pmol∙s<sup>-1</sup>∙mL<sup>-1</sup> as a quality criterion.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>::* Keep an eye on the value 'O<sub>2</sub> slope neg.'<ins style="font-weight: bold; text-decoration: none;">(orange arrow)</ins>. It should be within the range of -1 to 1 pmol∙s<sup>-1</sup>∙mL<sup>-1</sup> as a quality criterion.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::* Click 'Show details' for a more detailed compilation of values used to compute the oxygen concentration from the raw signal received from the POS sensor.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::* Click 'Show details' for a more detailed compilation of values used to compute the oxygen concentration from the raw signal received from the POS sensor.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::* 'Copy to clipboard' for data analysis outside of DatLab8. We recommend to use Excel templates provided together with the O2k instrument for long-time record of R1 and R0 to observe sudden changes as hints for errors.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::* 'Copy to clipboard' for data analysis outside of DatLab8. We recommend to use Excel templates provided together with the O2k instrument for long-time record of R1 and R0 to observe sudden changes as hints for errors.</div></td></tr>
</table>Spitzer Gudrunhttps://wiki.oroboros.at/index.php?title=Talk:Oxygen_calibration_-_DatLab&diff=223004&oldid=prevSpitzer Gudrun at 09:56, 21 December 20212021-12-21T09:56:09Z<p></p>
<table style="background-color: #fff; color: #202122;" data-mw="interface">
<col class="diff-marker" />
<col class="diff-content" />
<col class="diff-marker" />
<col class="diff-content" />
<tr class="diff-title" lang="en">
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 09:56, 21 December 2021</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l16">Line 16:</td>
<td colspan="2" class="diff-lineno">Line 16:</td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::* Use the air calibration protocol as a guide to generate R1. Main steps:</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::* Use the air calibration protocol as a guide to generate R1. Main steps:</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::::* Record the oxygen signal while the chamber is filled with medium and the stopper is in the [[Open_chamber|'open chamber']] position.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::::* Record the oxygen signal while the chamber is filled with medium and the stopper is in the [[Open_chamber|'open chamber']] position.</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>::::* After equilibration the [[Raw_signal_-_DatLab|raw signal]] (<del style="font-weight: bold; text-decoration: none;">blue trace</del>) should be between 1 and 3 <del style="font-weight: bold; text-decoration: none;">(25 - 37 °C, up to altitude)</del>. The O2 slope neg. (red trace) should be within ± 2 (± 4 is acceptable) pmol∙s<sup>-1</sup>∙mL<sup>-1</sup>.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>::::* After equilibration the [[Raw_signal_-_DatLab|raw signal]] <ins style="font-weight: bold; text-decoration: none;">from the POS should be stable and around 2 </ins>(<ins style="font-weight: bold; text-decoration: none;">acceptable between 1 and 3</ins>)<ins style="font-weight: bold; text-decoration: none;">.</ins></div></td></tr>
<tr><td colspan="2"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"><!--</ins>should be <ins style="font-weight: bold; text-decoration: none;">stable and the [[Raw_signal_-_DatLab|raw signal]] </ins>between 1 and 3. The O2 slope neg. (red trace) should be within ± 2 (± 4 is acceptable) pmol∙s<sup>-1</sup>∙mL<sup>-1</sup>.<ins style="font-weight: bold; text-decoration: none;">--></ins></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::::* Set a mark and call it R1 (named automatically when the DatLab protocol is used).</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::::* Set a mark and call it R1 (named automatically when the DatLab protocol is used).</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"><!--::::* The [[Raw_signal_-_DatLab|raw signal]] from the POS should be stable and around 2 (acceptable between 1 and 3 at 25 to 37 °C up to 1000 m above sea level). 'O2 slope neg.' should be within the range of -1 to 1 pmol∙s<sup>-1</sup>∙mL<sup>-1</sup>.--></del></div></td><td colspan="2"></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[File:DL7_whole_window_calib_yellow_arrows2.png|thumb|right|800px|O2 calibration indicator fields in DatLab 7]]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[File:DL7_whole_window_calib_yellow_arrows2.png|thumb|right|800px|O2 calibration indicator fields in DatLab 7]]</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[File:DL8_exp_window_calib_yellow_arrows.png|thumb|right|800px|O2 calibration indicator fields in DatLab 8]]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[File:DL8_exp_window_calib_yellow_arrows.png|thumb|right|800px|O2 calibration indicator fields in DatLab 8]]</div></td></tr>
</table>Spitzer Gudrunhttps://wiki.oroboros.at/index.php?title=Talk:Oxygen_calibration_-_DatLab&diff=223003&oldid=prevSpitzer Gudrun at 08:40, 21 December 20212021-12-21T08:40:40Z<p></p>
<table style="background-color: #fff; color: #202122;" data-mw="interface">
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 08:40, 21 December 2021</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l60">Line 60:</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=== Section 'O2 calibration Chamber A' ===</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=== Section 'O2 calibration Chamber A' ===</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">::* If an O2 calibration was performed with the same sensor numbers before, the values in this section will be preset according to the earlier calibration. Still, make sure that the values are still valid for the current experiment.</del></div></td><td colspan="2"></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">::* Take care to enter the correct O2 solubility factor for your medium. The field '[[Oxygen_solubility_factor|O2 solubility factor of medium]]' will be '1.0000' by default as a starting point. Typical media have lower values, e.g. 0.92 for [[MiR05]].</del></div></td><td colspan="2"></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td colspan="2"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">::* Sensor number and medium are displayed according to user input before starting a measurement. They can be updated here.</ins></div></td></tr>
<tr><td colspan="2"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">::* Take care to enter the correct O2 solubility factor for your medium. The field '[[Oxygen_solubility_factor|O2 solubility factor of medium]]' will be '1.0000' by default as a starting point. Typical media have lower values, e.g. 0.92 for [[MiR05]]. If an O2 calibration was performed (and saved as default) before or loaded from a file, the value will be preset according to the earlier calibration. DatLab 8 accepts earlier calibrations only if they were performed with the same sensor. Still, make sure that the values are still valid for the current experiment.</ins></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=== Section 'Air calibration source' ===</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=== Section 'Air calibration source' ===</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::; Active file</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::; Active file</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::::should be selected when the daily air calibration routine is performed.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::::should be selected when the daily air calibration routine is performed.</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>::::A [[Marks_-_DatLab|mark]] with the name 'R1' is required. When performing an air calibration guided by the DatLab protocol 'Instrumental <del style="font-weight: bold; text-decoration: none;">procotol</del>: air calibration' the mark name will be set to 'R1' automatically. If not, create a mark and change its name to 'R1' by clicking on its top blue bar in the graph.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>::::A [[Marks_-_DatLab|mark]] with the name 'R1' is required. When performing an air calibration guided by the DatLab protocol 'Instrumental <ins style="font-weight: bold; text-decoration: none;">protocol</ins>: air calibration' the mark name will be set to 'R1' automatically. If not, create a mark and change its name to 'R1' by clicking on its top blue bar in the graph.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::::After changing the mark R1 during a calibration, press 'Update' to load the new value.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::::After changing the mark R1 during a calibration, press 'Update' to load the new value.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::; Calibration file</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::; Calibration file</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>::::is preselected whenever DatLab finds <del style="font-weight: bold; text-decoration: none;">calbration </del>values that were applied earlier. Check and confirm the values.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>::::is preselected whenever DatLab finds <ins style="font-weight: bold; text-decoration: none;">calibration </ins>values that were applied earlier. Check and confirm the values.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::::Alternatively, another file recorded with the same sensor number and containing a mark 'R1' can be loaded.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::::Alternatively, another file recorded with the same sensor number and containing a mark 'R1' can be loaded.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::; Manual</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::; Manual</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>::::is <del style="font-weight: bold; text-decoration: none;">pre-selected </del>when DatLab 8 does not find values from a previous O2 calibration. Default values are shown and can be edited manually.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>::::is <ins style="font-weight: bold; text-decoration: none;">preselected </ins>when DatLab 8 does not find values from a previous O2 calibration. Default values are shown and can be edited manually.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::::Default values of option 'Manual' provide a starting point but are not appropriate for use in experiments.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::::Default values of option 'Manual' provide a starting point but are not appropriate for use in experiments.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=== Section 'Zero calibration source' ===</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=== Section 'Zero calibration source' ===</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>::* The same options are available: 'Manual', 'Calibration file' and 'Active file'. The latter requires a mark named R0 in the active measurement. The DatLab<del style="font-weight: bold; text-decoration: none;">-</del>protocol: 'air and zero' provides guidance.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>::* The same options are available: 'Manual', 'Calibration file' and 'Active file'. The latter requires a mark named R0 in the active measurement. The DatLab protocol: 'air and zero' provides guidance.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::* In contrast to the 'air calibration' step, it is enough to perform zero calibration from time to time. Therefore 'Calibration file' will be applied more often.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::* In contrast to the 'air calibration' step, it is enough to perform zero calibration from time to time. Therefore 'Calibration file' will be applied more often.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=== Default settings ===</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=== Default settings ===</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>::* After selecting "Apply" or "OK" and '''during an active measurement''', the user will be asked if the O<sub>2</sub> calibration parameters should be used '''as default'''. Selecting 'Yes' will prompt DatLab to use the parameters (FM, R1, R0) for future experiments. The name of the calibration file will be displayed next to 'Calibration file' checkbox. DatLab 8 makes sure that the '''sensor number''' of the saved values corresponds to the sensor number in use<del style="font-weight: bold; text-decoration: none;">. It does not care about other settings</del>. It is the user's responsibility to make sure that</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>::* After selecting "Apply" or "OK" and '''during an active measurement''', the user will be asked if the O<sub>2</sub> calibration parameters should be used '''as default'''. Selecting 'Yes' will prompt DatLab to use the parameters (FM, R1, R0) for future experiments. The name of the calibration file will be displayed next to 'Calibration file' checkbox. DatLab 8 makes sure that the '''sensor number''' of the saved values corresponds to the sensor number in use. It is the user's responsibility to make sure that <ins style="font-weight: bold; text-decoration: none;">parameters like</ins></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::::* solubility factor FM</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::::* solubility factor FM</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::::* medium</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::::* medium</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::::* and experimental temperature</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::::* and experimental temperature</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>::: of the calibration experiment correspond with the experiment the default values <del style="font-weight: bold; text-decoration: none;">are </del>used for.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>::: of the calibration experiment correspond with the experiment the default values <ins style="font-weight: bold; text-decoration: none;">shall be </ins>used for. </div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><!--* How to get R1 and R0</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><!--* How to get R1 and R0</div></td></tr>
</table>Spitzer Gudrunhttps://wiki.oroboros.at/index.php?title=Talk:Oxygen_calibration_-_DatLab&diff=222987&oldid=prevSpitzer Gudrun at 11:17, 20 December 20212021-12-20T11:17:48Z<p></p>
<table style="background-color: #fff; color: #202122;" data-mw="interface">
<col class="diff-marker" />
<col class="diff-content" />
<col class="diff-marker" />
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<tr class="diff-title" lang="en">
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 11:17, 20 December 2021</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l16">Line 16:</td>
<td colspan="2" class="diff-lineno">Line 16:</td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::* Use the air calibration protocol as a guide to generate R1. Main steps:</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::* Use the air calibration protocol as a guide to generate R1. Main steps:</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::::* Record the oxygen signal while the chamber is filled with medium and the stopper is in the [[Open_chamber|'open chamber']] position.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::::* Record the oxygen signal while the chamber is filled with medium and the stopper is in the [[Open_chamber|'open chamber']] position.</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>::::* After equilibration the raw signal (blue trace) should be between 1 and 3 (25 - 37 °C, up to altitude). The <del style="font-weight: bold; text-decoration: none;">noise of the </del>O2 slope neg. (red trace) should be within ± 2 (± 4 is acceptable) pmol∙s<sup>-1</sup>∙mL<sup>-1</sup>.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>::::* After equilibration the <ins style="font-weight: bold; text-decoration: none;">[[Raw_signal_-_DatLab|</ins>raw signal<ins style="font-weight: bold; text-decoration: none;">]] </ins>(blue trace) should be between 1 and 3 (25 - 37 °C, up to altitude). The O2 slope neg. (red trace) should be within ± 2 (± 4 is acceptable) pmol∙s<sup>-1</sup>∙mL<sup>-1</sup>.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::::* Set a mark and call it R1 (named automatically when the DatLab protocol is used).</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::::* Set a mark and call it R1 (named automatically when the DatLab protocol is used).</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><!--::::* The [[Raw_signal_-_DatLab|raw signal]] from the POS should be stable and around 2 (acceptable between 1 and 3 at 25 to 37 °C up to 1000 m above sea level). 'O2 slope neg.' should be within the range of -1 to 1 pmol∙s<sup>-1</sup>∙mL<sup>-1</sup>.--></div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><!--::::* The [[Raw_signal_-_DatLab|raw signal]] from the POS should be stable and around 2 (acceptable between 1 and 3 at 25 to 37 °C up to 1000 m above sea level). 'O2 slope neg.' should be within the range of -1 to 1 pmol∙s<sup>-1</sup>∙mL<sup>-1</sup>.--></div></td></tr>
</table>Spitzer Gudrunhttps://wiki.oroboros.at/index.php?title=Talk:Oxygen_calibration_-_DatLab&diff=222985&oldid=prevSpitzer Gudrun at 09:31, 20 December 20212021-12-20T09:31:06Z<p></p>
<table style="background-color: #fff; color: #202122;" data-mw="interface">
<col class="diff-marker" />
<col class="diff-content" />
<col class="diff-marker" />
<col class="diff-content" />
<tr class="diff-title" lang="en">
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 09:31, 20 December 2021</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l16">Line 16:</td>
<td colspan="2" class="diff-lineno">Line 16:</td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::* Use the air calibration protocol as a guide to generate R1. Main steps:</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::* Use the air calibration protocol as a guide to generate R1. Main steps:</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::::* Record the oxygen signal while the chamber is filled with medium and the stopper is in the [[Open_chamber|'open chamber']] position.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::::* Record the oxygen signal while the chamber is filled with medium and the stopper is in the [[Open_chamber|'open chamber']] position.</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>::::* <del style="font-weight: bold; text-decoration: none;">The </del>raw signal (blue trace) should be between 1 and 3 (<del style="font-weight: bold; text-decoration: none;">between sea level and 1000 m altitude, temperature is </del>25 - <del style="font-weight: bold; text-decoration: none;">37v°C</del>). <del style="font-weight: bold; text-decoration: none;">Signal noise should be low, reflected in the </del>noise of the O2 slope</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>::::* <ins style="font-weight: bold; text-decoration: none;">After equilibration the </ins>raw signal (blue trace) should be between 1 and 3 (25 - <ins style="font-weight: bold; text-decoration: none;">37 °C, up to altitude</ins>). <ins style="font-weight: bold; text-decoration: none;">The </ins>noise of the O2 slope neg. (red trace) <ins style="font-weight: bold; text-decoration: none;">should be </ins>within ± 2 (± 4 is acceptable) pmol∙s<sup>-1</sup>∙mL<sup>-1</sup>.</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>neg. (red trace) within ± 2 (± 4 is acceptable) pmol∙s<sup>-1</sup>∙mL<sup>-1</sup>.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>::::* <ins style="font-weight: bold; text-decoration: none;">Set </ins>a mark and call it R1 (named automatically when the DatLab protocol is used).</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>::::* <del style="font-weight: bold; text-decoration: none;">After equilibration set </del>a mark and call it R1 (named automatically when the DatLab protocol is used).</div></td><td colspan="2"></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><!--::::* The [[Raw_signal_-_DatLab|raw signal]] from the POS should be stable and around 2 (acceptable between 1 and 3 at 25 to 37 °C up to 1000 m above sea level). 'O2 slope neg.' should be within the range of -1 to 1 pmol∙s<sup>-1</sup>∙mL<sup>-1</sup>.--></div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><!--::::* The [[Raw_signal_-_DatLab|raw signal]] from the POS should be stable and around 2 (acceptable between 1 and 3 at 25 to 37 °C up to 1000 m above sea level). 'O2 slope neg.' should be within the range of -1 to 1 pmol∙s<sup>-1</sup>∙mL<sup>-1</sup>.--></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[File:DL7_whole_window_calib_yellow_arrows2.png|thumb|right|800px|O2 calibration indicator fields in DatLab 7]]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[File:DL7_whole_window_calib_yellow_arrows2.png|thumb|right|800px|O2 calibration indicator fields in DatLab 7]]</div></td></tr>
<tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l30">Line 30:</td>
<td colspan="2" class="diff-lineno">Line 29:</td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::* Use the 'air and zero' calibration protocol as a guide to generate R0. Main steps:</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::* Use the 'air and zero' calibration protocol as a guide to generate R0. Main steps:</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::::* In the [[Closed_chamber|closed chamber]] remove the oxygen from the medium (chemically by adding sodium dithionite or biologically by adding oxygen consuming sample).</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::::* In the [[Closed_chamber|closed chamber]] remove the oxygen from the medium (chemically by adding sodium dithionite or biologically by adding oxygen consuming sample).</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>::::* The [[Raw_signal_-_DatLab|raw signal]] from the POS should be stable and < 2% of the signal at air saturation<del style="font-weight: bold; text-decoration: none;">, but < </del>5% is acceptable.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>::::* The [[Raw_signal_-_DatLab|raw signal]] from the POS should be stable and < 2% of the signal at air saturation <ins style="font-weight: bold; text-decoration: none;">(up to </ins>5% is acceptable<ins style="font-weight: bold; text-decoration: none;">)</ins>.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::::* Set a mark and call it R0 (named automatically during the DatLab protocol).</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::::* Set a mark and call it R0 (named automatically during the DatLab protocol).</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::; Instrumental O2 background test</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::; Instrumental O2 background test</div></td></tr>
</table>Spitzer Gudrunhttps://wiki.oroboros.at/index.php?title=Talk:Oxygen_calibration_-_DatLab&diff=222968&oldid=prevSpitzer Gudrun at 09:01, 20 December 20212021-12-20T09:01:22Z<p></p>
<table style="background-color: #fff; color: #202122;" data-mw="interface">
<col class="diff-marker" />
<col class="diff-content" />
<col class="diff-marker" />
<col class="diff-content" />
<tr class="diff-title" lang="en">
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 09:01, 20 December 2021</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l16">Line 16:</td>
<td colspan="2" class="diff-lineno">Line 16:</td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::* Use the air calibration protocol as a guide to generate R1. Main steps:</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::* Use the air calibration protocol as a guide to generate R1. Main steps:</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::::* Record the oxygen signal while the chamber is filled with medium and the stopper is in the [[Open_chamber|'open chamber']] position.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::::* Record the oxygen signal while the chamber is filled with medium and the stopper is in the [[Open_chamber|'open chamber']] position.</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2"></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::::* The raw signal (blue trace) should be between 1 and 3 (between sea level and 1000 m altitude, temperature is 25 - 37v°C). Signal noise should be low, reflected in the noise of the O2 slope</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::::* The raw signal (blue trace) should be between 1 and 3 (between sea level and 1000 m altitude, temperature is 25 - 37v°C). Signal noise should be low, reflected in the noise of the O2 slope</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>neg. (red trace) within ± 2 (± 4 is acceptable) pmol∙s<sup>-1</sup>∙mL<sup>-1</sup>.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>neg. (red trace) within ± 2 (± 4 is acceptable) pmol∙s<sup>-1</sup>∙mL<sup>-1</sup>.</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2"></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::::* After equilibration set a mark and call it R1 (named automatically when the DatLab protocol is used).</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>::::* After equilibration set a mark and call it R1 (named automatically when the DatLab protocol is used).</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><!--::::* The [[Raw_signal_-_DatLab|raw signal]] from the POS should be stable and around 2 (acceptable between 1 and 3 at 25 to 37 °C up to 1000 m above sea level). 'O2 slope neg.' should be within the range of -1 to 1 pmol∙s<sup>-1</sup>∙mL<sup>-1</sup>.--></div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><!--::::* The [[Raw_signal_-_DatLab|raw signal]] from the POS should be stable and around 2 (acceptable between 1 and 3 at 25 to 37 °C up to 1000 m above sea level). 'O2 slope neg.' should be within the range of -1 to 1 pmol∙s<sup>-1</sup>∙mL<sup>-1</sup>.--></div></td></tr>
</table>Spitzer Gudrun