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Bouitbir 2016 Antioxid Redox Signal + (AIMS: Although statins are the most widely … AIMS: Although statins are the most widely used cholesterol-lowering agents, they are associated with a variety of muscle complaints. The goal of this study was to characterize the effects of statins on the mitochondrial apoptosis pathway induced by mitochondrial oxidative stress in skeletal muscle using human muscle biopsies as well as ''in vivo'' and ''in vitro'' models.RESULTS:Statins increased mitochondrial H2O2 production, the Bax/Bcl-2 ratio and TUNEL staining in deltoid biopsies of patients with statin-associated myopathy. Furthermore, atorvastatin treatment for two weeks at 10 mg/kg/day in rats increased H2O2 accumulation, and mRNA levels and immunostaining of the Bax/Bcl-2 ratio, as well as TUNEL staining and caspase 3 cleavage in glycolytic (plantaris) skeletal muscle but not in oxidative (soleus) skeletal muscle, which has a high antioxidative capacity. Atorvastatin also decreased the GSH/GSSG ratio, but only in glycolytic skeletal muscle. Co-treatment with the antioxidant quercetin at 25 mg/kg/d abolished these effects in plantaris. An ''in vitro'' study with L6 myoblasts directly demonstrated the link between mitochondrial oxidative stress following atorvastatin exposure and activation of the mitochondrial apoptosis signaling pathway.INNOVATION:Treatment with atorvastatin is associated with mitochondrial oxidative stress, which activates apoptosis and contributes to myopathy. Glycolytic muscles are more sensitive to atorvastatin than oxidative muscles, which may be due to the higher antioxidative capacity in oxidative muscles.CONCLUSION:There is a link between statin-induced mitochondrial oxidative stress and activation of the mitochondrial apoptosis signaling pathway in glycolytic skeletal muscle, which may be associated with statin-associated myopathy.ay in glycolytic skeletal muscle, which may be associated with statin-associated myopathy.)
Lancel 2012 PLoS One + (AIMS: Metabolic syndrome induces cardiac d … AIMS: Metabolic syndrome induces cardiac dysfunction associated with mitochondria abnormalities. As low levels of carbon monoxide (CO) may improve myocardial and mitochondrial activities, we tested whether a CO-releasing molecule (CORM-3) reverses metabolic syndrome-induced cardiac alteration through changes in mitochondrial biogenesis, dynamics and autophagy. METHODS AND RESULTS: Mice were fed with normal diet (ND) or high-fat diet (HFD) for twelve weeks. Then, mice received two intraperitoneal injections of CORM-3 (10 mg x kg(-1)), with the second one given 16 hours after the first. Contractile function in isolated hearts and mitochondrial parameters were evaluated 24 hours after the last injection. Mitochondrial population was explored by electron microscopy. Changes in mitochondrial dynamics, biogenesis and autophagy were assessed by western-blot and RT-qPCR. Left ventricular developed pressure was reduced in HFD hearts. Mitochondria from HFD hearts presented reduced membrane potential and diminished ADP-coupled respiration. CORM-3 restored both cardiac and mitochondrial functions. Size and number of mitochondria increased in the HFD hearts but not in the CORM-3-treated HFD group. CORM-3 modulated HFD-activated mitochondrial fusion and biogenesis signalling. While autophagy was not activated in the HFD group, CORM-3 increased the autophagy marker LC3-II. Finally, ''ex vivo'' experiments demonstrated that autophagy inhibition by 3-methyladenine abolished the cardioprotective effects of CORM-3. CONCLUSION: CORM-3 may modulate pathways controlling mitochondrial quality, thus leading to improvements of mitochondrial efficiency and HFD-induced cardiac dysfunction.iency and HFD-induced cardiac dysfunction.)
Haram 2009 Cardiovasc Res + (AIMS: The recent development of a rat mode … AIMS: The recent development of a rat model that closely resembles the metabolic syndrome allows to study the mechanisms of amelioration of the syndrome by exercise training. Here, we compared the effectiveness for reducing cardiovascular risk factors by exercise training programmes of different exercise intensities.METHODS AND RESULTS: Metabolic syndrome rats were subjected to either continuous moderate-intensity exercise (CME) or high-intensity aerobic interval training (AIT). AIT was more effective than CME at reducing cardiovascular disease risk factors linked to the metabolic syndrome. Thus, AIT produced a larger stimulus than CME for increasing maximal oxygen uptake (VO2max; 45 vs. 10%, ''P'' < 0.01), reducing hypertension (20 vs. 6 mmHg, ''P'' < 0.01), HDL cholesterol (25 vs. 0%, ''P'' < 0.05), and beneficially altering metabolism in fat, liver, and skeletal muscle tissues. Moreover, AIT had a greater beneficial effect than CME on sensitivity of aorta ring segments to acetylcholine (2.7- vs. 2.0-fold, ''P'' < 0.01), partly because of intensity-dependent effects on expression levels of nitric oxide synthase and the density of caveolae, and a greater effect than CME on the skeletal muscle Ca2+ handling (50 vs. 0%, ''P'' < 0.05). The two exercise training programmes, however, were equally effective at reducing body weight and fat content.CONCLUSION: High-intensity exercise training was more beneficial than moderate-intensity exercise training for reducing cardiovascular risk in rats with the metabolic syndrome. This was linked to more superior effects on VO2max, endothelial function, blood pressure, and metabolic parameters in several tissues. These results demonstrate that exercise training reduces the impact of the metabolic syndrome and that the magnitude of the effect depends on exercise intensity.of the metabolic syndrome and that the magnitude of the effect depends on exercise intensity.)
Garcia-Roves 2008 J Biol Chem + (AMP-activated protein kinase (AMPK) is a h … AMP-activated protein kinase (AMPK) is a heterotrimeric complex, composed of a catalytic subunit (α) and two regulatory subunits (β and γ), that works as a cellular energy sensor. The existence of multiple heterotrimeric complexes provides a molecular basis for the multiple roles of this highly conserved signaling system. The AMPKγ3 subunit is predominantly expressed in skeletal muscle, mostly in type II glycolytic fiber types. We determined whether the AMPKγ3 subunit has a role in signaling pathways that mediate mitochondrial biogenesis in skeletal muscle. We provide evidence that overexpression or ablation of the AMPKγ3 subunit does not appear to play a critical role in defining mitochondrial content in resting skeletal muscle. However, overexpression of a mutant form (R225Q) of the AMPKγ3 subunit (Tg-AMPKγ3225Q) increases mitochondrial biogenesis in glycolytic skeletal muscle. These adaptations are associated with an increase in expression of the co-activator [[PGC-1α]] and several transcription factors that regulate mitochondrial biogenesis, including NRF-1, NRF-2, and TFAM. Succinate dehydrogenase staining, a marker of the oxidative profile of individual fibers, was also increased in transversal skeletal muscle sections of white gastrocnemius muscle from Tg-AMPKγ3225Q mice, independent of changes in fiber type composition. In conclusion, a single nucleotide mutation (R225Q) in the AMPK gamma3 subunit is associated with mitochondrial biogenesis in glycolytic skeletal muscle, concomitant with increased expression of the co-activator [[PGC-1α]] and several transcription factors that regulate mitochondrial proteins, without altering fiber type composition. and several transcription factors that regulate mitochondrial proteins, without altering fiber type composition.)
Mungai 2011 Mol Cell Biol + (AMP-activated protein kinase (AMPK) is an … AMP-activated protein kinase (AMPK) is an energy sensor activated by increases in [AMP] or by oxidant stress (reactive oxygen species [ROS]). Hypoxia increases cellular ROS signaling, but the pathways underlying subsequent AMPK activation are not known. We tested the hypothesis that hypoxia activates AMPK by ROS-mediated opening of calcium release-activated calcium (CRAC) channels. Hypoxia (1.5% O2) augments cellular ROS as detected by the redox-sensitive green fluorescent protein (roGFP) but does not increase the [AMP]/[ATP] ratio. Increases in intracellular calcium during hypoxia were detected with Fura2 and the calcium-calmodulin fluorescence resonance energy transfer (FRET) sensor YC2.3. Antioxidant treatment or removal of extracellular calcium abrogates hypoxia-induced calcium signaling and subsequent AMPK phosphorylation during hypoxia. Oxidant stress triggers relocation of stromal interaction molecule 1 (STIM1), the endoplasmic reticulum (ER) Ca2+ sensor, to the plasma membrane. Knockdown of STIM1 by short interfering RNA (siRNA) attenuates the calcium responses to hypoxia and subsequent AMPK phosphorylation, while inhibition of L-type calcium channels has no effect. Knockdown of the AMPK upstream kinase LKB1 by siRNA does not prevent AMPK activation during hypoxia, but knockdown of CaMKKβ abolishes the AMPK response. These findings reveal that hypoxia can trigger AMPK activation in the apparent absence of increased [AMP] through ROS-dependent CRAC channel activation, leading to increases in cytosolic calcium that activate the AMPK upstream kinase CaMKKβ. activate the AMPK upstream kinase CaMKKβ.)
Zachariah 2014 Diabetes + (AMP-activated protein kinase (AMPK) is a h … AMP-activated protein kinase (AMPK) is a heterotrimeric complex, composed of a catalytic subunit (α) and two regulatory subunits (β and γ), which act as a metabolic sensor to regulate glucose and lipid metabolism. A mutation in the γ3 subunit (AMPKγ3(R225Q)) increases basal AMPK phosphorylation, while concomitantly reducing sensitivity to AMP. AMPKγ3(R225Q) (γ3(R225Q)) transgenic mice are protected against dietary-induced triglyceride accumulation and insulin resistance. We determined whether skeletal muscle-specific expression of AMPKγ3(R225Q) prevents metabolic abnormalities in leptin-deficient ob/ob (ob/ob-γ3(R225Q)) mice. Glycogen content was increased, triglyceride content was decreased, and diacylglycerol and ceramide content were unaltered in gastrocnemius muscle from ob/ob-γ3(R225Q) mice, whereas glucose tolerance was unaltered. Insulin-stimulated glucose uptake in extensor digitorum longus muscle during the euglycemic-hyperinsulinemic clamp was increased in lean γ3(R225Q) mice, but not in ob/ob-γ3(R225Q) mice. Acetyl-CoA carboxylase phosphorylation was increased in gastrocnemius muscle from γ3(R225Q) mutant mice independent of adiposity. Glycogen and triglyceride content were decreased after leptin treatment (5 days) in ob/ob mice, but not in ob/ob-γ3(R225Q) mice. In conclusion, metabolic improvements arising from muscle-specific expression of AMPKγ3(R225Q) are insufficient to ameliorate insulin resistance and obesity in leptin-deficient mice. Central defects due to leptin deficiency may override any metabolic benefit conferred by peripheral overexpression of the AMPKγ3(R225Q) mutation.rexpression of the AMPKγ3(R225Q) mutation.)
Dorigatti 2021 Geroscience + (AMP-activated protein kinase (AMPK) is a c … AMP-activated protein kinase (AMPK) is a central regulator of both lifespan and health across multiple model organisms. β-Guanidinopropionic acid (GPA) is an endogenous AMPK activator previously shown to improve metabolic function in young and obese mice. In this study, we tested whether age of administration significantly affects the physiological outcomes of GPA administration in mice. We report that intervention starting at 7-8 months (young) results in activation of AMPK signaling and a phenotype consisting of lower body mass, improved glucose control, enhanced exercise tolerance, and altered mitochondrial electron transport chain flux similar to previous reports. When GPA treatment is started at 18-19 months (old), the effect of GPA on AMPK signaling is blunted compared to younger mice despite similar accumulation of GPA in skeletal muscle. Even so, GPA administration in older animals delayed age-related declines in lean mass, improved measures of gait performance and circadian rhythm, and increased fat metabolism as measured by respiratory exchange ratio. These results are likely partially driven by the relative difference in basal function and metabolic plasticity between young and old mice. Our results suggest that age-related declines in AMPK sensitivity may limit potential strategies targeting AMPK signaling in older subjects and suggest that further research and development is required for AMPK activators to realize their full potential.ctivators to realize their full potential.)
Coelho 2015 Abstract Thyroid Cancer + (AMP-activated protein kinase (AMPK) is a s … AMP-activated protein kinase (AMPK) is a sensor of cellular energy status that acts directly on cell proliferation and on transition from anaerobic to aerobic metabolic state. Our group showed that the activated form of AMPK (pAMPK) is overexpressed in papillary thyroid carcinoma (PTC) cases by immunohistochemistry. AMPK presents anti proliferative effects, so the biological meaning of AMPK activation in thyroid tumor cells and the consequences of its further activation on PTC metabolism is not known. We used the PTC-derived BCPAP cell line to analyze cellular responses to a further stimulation of AMPK with the pharmacological activator 5-aminoimidazole-4 carboxamide ribonucleoside (1 mM AICAR). Cell viability was measured by MTT, and apoptosis was analyzed by the expression of Annexin V by Muse cell analyser. ROS was measured by DCFHD probe by FACS. Oxygen consumption was measured using high-resolution respirometry (Oroboros). Hexokinase (HK) tertiary structure was evaluated on a spectrofluorometer (Jasco).BCPAP cells constitutively express high pAMPK levels, which correlates with the high glucose consumption rate (2 fold) and lactate production (2 fold), but lower oxygen consumption (30%) in these cells when compared to the nontumoral NTHYori cell line. AICAR exposure further stimulated these metabolic parameters, but decreased BCPAP cell viability (4 fold), with increased (1.5 fold) production of reactive oxygen species (ROS). HK is an enzyme of the glycolysis pathway that, upon binding to mitochondria, protects against ROS. We observed an increase in HK activity (1.4 fold) produced by AICAR, but not in its association with HK-mitochondrial activity. Purified HK experiments confirmed that ROS (100 μM Z2O2) alters the tertiary structure of HK decreasing its mitochondrial binding. The presence of NAC prevented cell death induced by AICAR treatment. Overall, these results suggest that, despite the upregulation of glucose metabolism by AMPK, chronic activation of the enzyme with AICAR increases ROS levels promoting a negative regulation of HK-mitochondrial binding. The further increase in ROS production induced by AICAR might play a role in the induction of tumor cell apoptosis. AICAR might play a role in the induction of tumor cell apoptosis.)
Canto 2009 Nature + (AMP-activated protein kinase (AMPK) is a m … AMP-activated protein kinase (AMPK) is a metabolic fuel gauge conserved along the evolutionary scale in eukaryotes that senses changes in the intracellular AMP/ATP ratio. Recent evidence indicated an important role for AMPK in the therapeutic benefits of metformin, thiazolidinediones and exercise, which form the cornerstones of the clinical management of type 2 diabetes and associated metabolic disorders. In general, activation of AMPK acts to maintain cellular energy stores, switching on catabolic pathways that produce ATP, mostly by enhancing oxidative metabolism and mitochondrial biogenesis, while switching off anabolic pathways that consume ATP. This regulation can take place acutely, through the regulation of fast post-translational events, but also by transcriptionally reprogramming the cell to meet energetic needs. Here we demonstrate that AMPK controls the expression of genes involved in energy metabolism in mouse skeletal muscle by acting in coordination with another metabolic sensor, the NAD+-dependent type III deacetylase SIRT1. AMPK enhances SIRT1 activity by increasing cellular NAD+ levels, resulting in the deacetylation and modulation of the activity of downstream SIRT1 targets that include the [[PGC-1alpha|peroxisome proliferator-activated receptor-gamma coactivator 1alpha]] and the forkhead box O1 (FOXO1) and O3 (FOXO3a) transcription factors. The AMPK-induced SIRT1-mediated deacetylation of these targets explains many of the convergent biological effects of AMPK and SIRT1 on energy metabolism.ts of AMPK and SIRT1 on energy metabolism.)
ASMRM 2021 Singapore SG + (ASMRM 2020, Singapore, SG, 2021)
Li 2014 Mol Cell Biol + (ATAD3 is a vital ATPase of the inner mitoc … ATAD3 is a vital ATPase of the inner mitochondrial membrane of pluri-cellular eucaryotes with largely unknown functions. Invalidation of ATAD3 blocks organism development at early stages requiring mitochondrial mass increase. Since ATAD3 knock-down (KD) in C. elegans inhibits first of all the development of adipocyte-like intestinal tissue, we used mouse adipocyte model 3T3-L1 cells to analyze ATAD3 functions during adipogenesis. By stable and transient modulation of ATAD3 expression in adipogenesis-induced 3T3-L1 cells, we show that (i) an increase in ATAD3 is preceding mitochondrial biogenesis and remodelling; (ii) down-regulation of ATAD3 inhibits adipogenesis, lipogenesis, and impedes overexpression of many mitochondrial proteins; (iii) ATAD3 re-expression rescues the phenotype of ATAD3 KD, and (iv) differentiation and lipogenesis are accelerated by ATAD3 overexpression, but inhibited by expression of a dominant-negative mutant. We further show that the ATAD3 KD phenotype is not due to altered insulin signal, but involves a limitation of mitochondrial biogenesis and remodelling linked to Drp1. These results demonstrate that ATAD3 is limiting for ''in vitro'' adipogenesis and lipogenesis.''in vitro'' adipogenesis and lipogenesis.)
Koopman 2015 Abstract MiP2015 + (ATP can be produced in the cytosol by glyc … ATP can be produced in the cytosol by glycolytic conversion of glucose (GLC) into pyruvate (PYR). The latter can be metabolized into lactate (LAC), which is released by the cell, or taken up by mitochondria to fuel ATP production by the tricarboxylic acid (TCA) cycle and oxidative phosphorylation (OXPHOS) system. Altering the balance between glycolytic and mitochondrial ATP generation is crucial for cell survival during mitoenergetic dysfunction, which is observed in a large variety of human disorders including cancer [1].To gain insight into the kinetic properties of this adaptive mechanism we here determined how acute (30 min) inhibition of OXPHOS affected cytosolic GLC homeostasis. GLC dynamics were analyzed in single living C2C12 myoblasts expressing the fluorescent biosensor FLII12Pglu-700µδ6 (FLII, [2]). Following ''in situ'' FLII calibration, the kinetic properties of GLC uptake (V1) and GLC consumption (V2) were determined independently and used to construct a minimal mathematical model of cytosolic GLC dynamics [3].After validating the model, it was applied to quantitatively predict V1 and V2 at steady-state (i.e. when V1=V2=Vsteady-state) in the absence and presence of OXPHOS inhibitors. Integrating model predictions with experimental data on LAC production, cell volume and oxygen consumption revealed that glycolysis and mitochondria equally contribute to cellular ATP production in control myoblasts. Inhibition of OXPHOS induced a 2-fold increase in Vsteady-state and glycolytic ATP production flux. Both in the absence and presence of OXPHOS inhibitors, GLC was consumed at near maximal rates, meaning that GLC consumption is rate-limiting under steady-state conditions.Taken together, we here demonstrate that OXPHOS inhibition increases steady-state GLC uptake and consumption in C2C12 myoblasts [3]. The latter activation fully compensates for the reduction in mitochondrial ATP production, thereby maintaining the balance between cellular ATP supply and demand. The underlying mechanistic aspects and further consequences of this phenomenon [e.g. 4,5] are currently investigated.non [e.g. 4,5] are currently investigated.)
Liemburg-Apers 2015 Biophys J + (ATP can be produced in the cytosol by glyc … ATP can be produced in the cytosol by glycolytic conversion of glucose (GLC) into pyruvate. The latter can be metabolized into lactate, which is released by the cell, or taken up by mitochondria to fuel ATP production by the tricarboxylic acid cycle and oxidative phosphorylation (OXPHOS) system. Altering the balance between glycolytic and mitochondrial ATP generation is crucial for cell survival during mitoenergetic dysfunction, which is observed in a large variety of human disorders including cancer. To gain insight into the kinetic properties of this adaptive mechanism we determined here how acute (30 min) inhibition of OXPHOS affected cytosolic GLC homeostasis. GLC dynamics were analyzed in single living C2C12 myoblasts expressing the fluorescent biosensor FLII(12)Pglu-700μδ6 (FLII). Following ''in situ'' FLII calibration, the kinetic properties of GLC uptake (V1) and GLC consumption (V2) were determined independently and used to construct a minimal mathematical model of cytosolic GLC dynamics. After validating the model, it was applied to quantitatively predict V1 and V2 at steady-state (i.e., when V1 = V2 = Vsteady-state) in the absence and presence of OXPHOS inhibitors. Integrating model predictions with experimental data on lactate production, cell volume, and O2 consumption revealed that glycolysis and mitochondria equally contribute to cellular ATP production in control myoblasts. Inhibition of OXPHOS induced a twofold increase in Vsteady-state and glycolytic ATP production flux. Both in the absence and presence of OXPHOS inhibitors, GLC was consumed at near maximal rates, meaning that GLC consumption is rate-limiting under steady-state conditions. Taken together, we demonstrate here that OXPHOS inhibition increases steady-state GLC uptake and consumption in C2C12 myoblasts. This activation fully compensates for the reduction in mitochondrial ATP production, thereby maintaining the balance between cellular ATP supply and demand.Copyright © 2015 Biophysical Society. Published by Elsevier Inc. All rights reserved.shed by Elsevier Inc. All rights reserved.)
Pesout MiP2010 + (ATP decreases rapidly during ischemia. It … ATP decreases rapidly during ischemia. It is then degraded to adenosine, which moves to the extracellular space and activates adenosine receptors (ADOR). ADOR play a unique role in cardioprotection against ischemia reperfusion injury, because their activation is responsible for cardioprotection by ischemic preconditioning and ischemic postconditioning.onditioning and ischemic postconditioning.)
Bundgaard 2019 Sci Rep + (ATP depletion and succinate accumulation d … ATP depletion and succinate accumulation during ischemia lead to oxidative damage to mammalian organs upon reperfusion. In contrast, freshwater turtles survive weeks of anoxia at low temperatures without suffering from oxidative damage upon reoxygenation, but the mechanisms are unclear. To determine how turtles survive prolonged anoxia, we measured ~80 metabolites in hearts from cold-acclimated (5 °C) turtles exposed to 9 days anoxia and compared the results with those for normoxic turtles (25 °C) and mouse hearts exposed to 30 min of ischemia. In turtles, ATP and ADP decreased to new steady-state levels during fasting and cold-acclimation and further with anoxia, but disappeared within 30 min of ischemia in mouse hearts. High NADH/NAD+ ratios were associated with succinate accumulation in both anoxic turtles and ischemic mouse hearts. However, succinate concentrations and succinate/fumarate ratios were lower in turtle than in mouse heart, limiting the driving force for production of reactive oxygen species (ROS) upon reoxygenation in turtles. Furthermore, we show production of ROS from succinate is prevented by re-synthesis of ATP from ADP. Thus, maintenance of an ATP/ADP pool and low succinate accumulation likely protects turtle hearts from anoxia/reoxygenation injury and suggests metabolic interventions as a therapeutic approach to limit ischemia/reperfusion injury in mammals.roach to limit ischemia/reperfusion injury in mammals.)
Ley-Ngardigal 2022 FEBS J + (ATP is the most universal and essential en … ATP is the most universal and essential energy molecule in cells. This is due to its ability to store cellular energy in form of high-energy phosphate bonds, which are extremely stable and readily usable by the cell. This energy is key for a variety of biological functions such as cell growth and division, metabolism, and signaling, and for the turnover of biomolecules. Understanding how ATP is produced and hydrolyzed with a spatiotemporal resolution is necessary to understand its functions both in physiological and in pathological contexts. In this review, first we will describe the organization of the electron transport chain and ATP synthase, the main molecular motor for ATP production in mitochondria. Second, we will review the biochemical assays currently available to estimate ATP quantities in cells, and we will compare their readouts, strengths, and weaknesses. Finally, we will explore the palette of genetically encoded biosensors designed for microscopy-based approaches, and show how their spatiotemporal resolution opened up the possibility to follow ATP levels in living cells.lity to follow ATP levels in living cells.)
Nuskova 2015 Abstract MiPschool London 2015 + (ATP produced by the mitochondrial FoF1-ATP … ATP produced by the mitochondrial FoF1-ATP synthase represents a major source of energy for aerobic organisms. Unsurprisingly, ATP synthase deficiencies are associated with severe pathologic phenotypes. To shed light on the functional consequences of ATP synthase deficiencies, we utilised a model of HEK293 cell line and explored the effect of RNAi mediated knockdown of the three subunits (γ, δ and ε) forming the central stalk of the enzyme connecting Fo and F1 domains.For functional evaluations of ATP synthase deficiencies, 10 stable knockdown clones with down-regulated subunits γ (ATP5C1 gene), δ (ATP5D gene), or ε (ATP5E gene) have been selected. The protein content of ATP synthase subunit α among the knockdown clones covers the range of 40–100 % as compared to controls. Further characterization of these clones revealed 2–78 % oligomycin-sensitive ATPase hydrolytic activity that parallels a decrease in the content of fully assembled ATP synthase complex.Two aspects of cellular energetics have been examined in detail, specifically respiration and glycolysis, using the Seahorse XFe24 analyser. Our results indicate that the clones with less than 30 % of residual ATPase activity switched their metabolism to enhanced glycolysis. There is a decrease in their basal respiration rate relatively to their respiratory capacity (47 vs 61 % in controls) and in parallel, their basal glycolytic rates utilise by up to 20 % more of their glycolytic capacity. These findings clearly demonstrate metabolic adaptations of these cells. On the other hand, the clones with more than 30 % residual ATPase activity displayed a change neither in the respiration nor in their basal glycolytic rate. In the case of ATP synthase deficiency, the mitochondrial membrane potential is expected to rise, which would then stimulate the production of reactive oxygen species (ROS). Indeed, the γ knockdown clones with a very low residual ATPase activity exhibit elevated ROS production. With respect to the role of the oxidative stress in ATP synthase deficiencies, we aim to examine oxidative damage of cell structures and the content of antioxidant enzymes.In conclusion, using these model clones, we are planning on investigating the effect of ATP synthase deficiency on the mitochondrial energetics, oxidative stress, energy state, and cell viability and define the threshold residual activity of ATP synthase for the presentation of pathological phenotype. At this moment, our data suggest that the threshold for metabolic remodelling equals to approximately 30 % of ATPase activity. to approximately 30 % of ATPase activity.)
Cortassa 2022 J Mol Cell Cardiol + (ATP synthase (F1Fo) is a rotary molecular … ATP synthase (F1Fo) is a rotary molecular engine that harnesses energy from electrochemical-gradients across the inner mitochondrial membrane for ATP synthesis. Despite the accepted tenet that F1Fo transports exclusively H+, our laboratory has demonstrated that, in addition to H+, F1Fo ATP synthase transports a significant fraction of ΔΨm-driven charge as K+ to synthesize ATP. Herein, we utilize a computational modeling approach as a proof of principle of the feasibility of the core mechanism underlying the enhanced ATP synthesis, and to explore its bioenergetic consequences. A minimal model comprising the 'core' mechanism constituted by ATP synthase, driven by both proton (PMF) and potassium motive force (KMF), respiratory chain, adenine nucleotide translocator, Pi carrier, and K+/H+ exchanger (KHEmito) was able to simulate enhanced ATP synthesis and respiratory fluxes determined experimentally with isolated heart mitochondria. This capacity of F1Fo ATP synthase confers mitochondria with a significant energetic advantage compared to K+ transport through a channel not linked to oxidative phosphorylation (OxPhos). The K+-cycling mechanism requires a KHEmito that exchanges matrix K+ for intermembrane space H+, leaving PMF as the overall driving energy of OxPhos, in full agreement with the standard chemiosmotic mechanism. Experimental data of state 4➔3 energetic transitions, mimicking low to high energy demand, could be reproduced by an integrated computational model of mitochondrial function that incorporates the 'core' mechanism. Model simulations display similar behavior compared to the experimentally observed changes in ΔΨm, mitochondrial K+ uptake, matrix volume, respiration, and ATP synthesis during the energetic transitions at physiological pH and K+ concentration. The model also explores the role played by KHEmito in modulating the energetic performance of mitochondria. The results obtained support the available experimental evidence on ATP synthesis driven by K+ and H+ transport through the F1Fo ATP synthase.+ transport through the F1Fo ATP synthase.)
Juhaszova 2021 Function (Oxf) + (ATP synthase (F1F&l … ATP synthase (F1Fo) synthesizes daily our body's weight in ATP, whose production-rate can be transiently increased several-fold to meet changes in energy utilization. Using purified mammalian F1Fo-reconstituted proteoliposomes and isolated mitochondria, we show F1Fo can utilize both Δ''Ψ''mt-driven H+- and K+-transport to synthesize ATP under physiological pH = 7.2 and K+ = 140 mEq/L conditions. Purely K+-driven ATP synthesis from single F1Fo molecules measured by bioluminescence photon detection could be directly demonstrated along with simultaneous measurements of unitary K+ currents by voltage clamp, both blocked by specific Fo inhibitors. In the presence of K+, compared to osmotically-matched conditions in which this cation is absent, isolated mitochondria display 3.5-fold higher rates of ATP synthesis, at the expense of 2.6-fold higher rates of oxygen consumption, these fluxes being driven by a 2.7:1 K+: H+ stoichiometry. The excellent agreement between the functional data obtained from purified F1Fo single molecule experiments and ATP synthase studied in the intact mitochondrion under unaltered OxPhos coupling by K+ presence, is entirely consistent with K+ transport through the ATP synthase driving the observed increase in ATP synthesis. Thus, both K+ (harnessing Δ''Ψ''mt) and H+ (harnessing its chemical potential energy, Δ''μ''H) drive ATP generation during normal physiology.istent with K+ transport through the ATP synthase driving the observed increase in ATP synthesis. Thus, both K+ (harnessing Δ''Ψ''mt) and H+ (harnessing its chemical potential energy, Δ''μ''H) drive ATP generation during normal physiology.)
Juhaszova 2019 bioRxiv + (ATP synthase (F1F&l … ATP synthase (F1Fo) synthesizes daily our body’s weight in ATP, whose production-rate can be transiently increased several-fold. Using purified mammalian F1Fo-reconstituted proteoliposomes and isolated mitochondria, we show that F1Fo utilizes both H+- and K+-transport (because of >106-fold K+ excess vs H+) to drive ATP synthesis with the H+:K+ permeability of ~106:1. F1Fo can be upregulated by endogenous survival-related proteins (Bcl-xL, Mcl-1) and synthetic molecules (diazoxide, pinacidil) to increase its chemo-mechanical efficiency via IF1. Increasing K+- and H+-driven ATP synthesis enables F1Fo to operate as a primary mitochondrial K+-uniporter regulating energy supply-demand matching, and as the recruitable mitochondrial KATP-channel that can limit ischemia-reperfusion injury. Isolated mitochondria in the presence of K+ can sustain ~3.5-fold higher ATP-synthesis-flux (vs K+ absence) driven by a 2.7:1 K+:H+ stoichiometry with unaltered OxPhos coupling. Excellent agreement between F1Fo single-molecule and intact-mitochondria experiments is consistent with K+-transport through ATP synthase driving a major fraction of ATP synthesis. (vs K+ absence) driven by a 2.7:1 K+:H+ stoichiometry with unaltered OxPhos coupling. Excellent agreement between F1Fo single-molecule and intact-mitochondria experiments is consistent with K+-transport through ATP synthase driving a major fraction of ATP synthesis.)
Walker 1994 Curr Opin Struct Biol + (ATP synthase is regulated so as to prevent … ATP synthase is regulated so as to prevent futile hydrolysis of ATP when the transmembrane proton electrochemical gradient, delta mu H+, falls. Mitochondria and chloroplasts have different mechanisms for inhibition of ATP synthase: by binding an inhibitor protein, and by stabilization of the ADP-inhibited state by making an intramolecular disulphide bond, respectively. The recently determined structure of bovine F1-ATPase is locked in a conformation that probably represents the ADP-inhibited state of the enzyme.nts the ADP-inhibited state of the enzyme.)
Klusch 2017 Elife + (ATP synthases produce ATP by rotary cataly … ATP synthases produce ATP by rotary catalysis, powered by the electrochemical proton gradient across the membrane. Understanding this fundamental process requires an atomic model of the proton pathway. We determined the structure of an intact mitochondrial ATP synthase dimer by electron cryo-microscopy at near-atomic resolution. Charged and polar residues of the a-subunit stator define two aqueous channels, each spanning one half of the membrane. Passing through a conserved membrane-intrinsic helix hairpin, the lumenal channel protonates an acidic glutamate in the c-ring rotor. Upon ring rotation, the protonated glutamate encounters the matrix channel and deprotonates. An arginine between the two channels prevents proton leakage. The steep potential gradient over the sub-nm inter-channel distance exerts a force on the deprotonated glutamate, resulting in net directional rotation.te, resulting in net directional rotation.)
Morciano 2017 Nat Protoc + (ATP, the energy exchange factor that conne … ATP, the energy exchange factor that connects anabolism and catabolism, is required for major reactions and processes that occur in living cells, such as muscle contraction, phosphorylation and active transport. ATP is also the key molecule in extracellular purinergic signaling mechanisms, with an established crucial role in inflammation and several additional disease conditions. Here, we describe detailed protocols to measure the ATP concentration in isolated living cells and animals using luminescence techniques based on targeted luciferase probes. In the presence of magnesium, oxygen and ATP, the protein luciferase catalyzes oxidation of the substrate luciferin, which is associated with light emission. Recombinantly expressed wild-type luciferase is exclusively cytosolic; however, adding specific targeting sequences can modify its cellular localization. Using this strategy, we have constructed luciferase chimeras targeted to the mitochondrial matrix and the outer surface of the plasma membrane. Here, we describe optimized protocols for monitoring ATP concentrations in the cytosol, mitochondrial matrix and pericellular space in living cells via an overall procedure that requires an average of 3 d. In addition, we present a detailed protocol for the in vivo detection of extracellular ATP in mice using luciferase-transfected reporter cells. This latter procedure may require up to 25 d to complete.cedure may require up to 25 d to complete.)
Bayot 2014 Biochimie + (ATP-dependent proteases are currently emer … ATP-dependent proteases are currently emerging as key regulators of mitochondrial functions. Among these proteolytic systems, Lon protease is involved in the control of selective protein turnover in the mitochondrial matrix. In the absence of Lon, yeast cells have been shown to accumulate electron-dense inclusion bodies in the matrix space, to loose integrity of mitochondrial genome and to be respiratory deficient. In order to address the role of Lon in mitochondrial functionality in human cells, we have set up a HeLa cell line stably transfected with a vector expressing a shRNA under the control of a promoter which is inducible with doxycycline. We have demonstrated that reduction of Lon protease results in a mild phenotype in this cell line in contrast with what have been observed in other cell types such as WI-38 fibroblasts. Nevertheless, deficiency in Lon protease led to an increase in ROS production and to an accumulation of carbonylated protein in the mitochondria. Our study suggests that Lon protease has a wide variety of targets and is likely to play different roles depending of the cell type.ifferent roles depending of the cell type.)
Kahancova 2018 FEBS Lett + (ATPase Inhibitory factor 1 (IF1) is an end … ATPase Inhibitory factor 1 (IF1) is an endogenous regulator of mitochondrial ATP synthase, which is involved in cellular metabolism. Although great progress has been made, biological roles of IF1 and molecular mechanisms of its action are still to be elucidated. Here, we show that IF1 is present in pancreatic β-cells, bound to the ATP synthase also under normal physiological conditions. IF1 silencing in model pancreatic β-cells (INS-1E) increases insulin secretion over a range of glucose concentrations. The left-shifted dose-response curve reveals excessive insulin secretion even under low glucose, corresponding to fasting conditions. A parallel increase in cellular respiration and ATP levels is observed. To conclude, our results indicate that IF1 is a negative regulator of insulin secretion involved in pancreatic β-cell glucose sensing.lved in pancreatic β-cell glucose sensing.)

ATSPB 2023 Hall AT + (ATSPB 2023, Hall in Tirol, Austria, 2023)

Gnaiger 2000 Transplant Proc + (AUTOOXIDATION reactions of highly reduced … AUTOOXIDATION reactions of highly reduced organic compounds are a source of reactive oxygen species that contribute to ischemia/reperfusion injury. Antioxidants such as reduced glutathione (GSH; g-glutamylcysteinylglycine) are added to organ preservation solutions to reduce oxidative stress.1,2 GSH is unstable, however, in University of Wisconsin (UW) solution in the presence of oxygen.3 To our knowledge, no reports are available on the stability of GSH in other organ preservation solutions, such as histidine-tryptophan-ketoglutarate (HTK) or Celsior solution. The present study reports for the first time a quantitative comparison of autooxidation of GSH in a variety of established preservation solutions, demonstrating in particular the high stability of GSH in HTK solution.nstrating in particular the high stability of GSH in HTK solution.)
ARVO 2018 Honolulu HI US + (AVRO - Association for Research in Vision and Ophthalmology, Honolulu, Hawaii, USA, 2018)
Abcam Mitochondria Meeting 2014 + (Abcam Mitochondria Meeting 2014, London, UK; [http://www.abcam.com/index.html?pageconfig=resource&rid=16185&viapagetrap=mitochondriafeb Abcam Mitochondria Meeting 2014])
Bricambert 2018 Nat Commun + (Aberrant histone methylation profile is re … Aberrant histone methylation profile is reported to correlate with the development and progression of NAFLD during obesity. However, the identification of specific epigenetic modifiers involved in this process remains poorly understood. Here, we identify the histone demethylase Plant Homeodomain Finger 2 (Phf2) as a new transcriptional co-activator of the transcription factor Carbohydrate Responsive Element Binding Protein (ChREBP). By specifically erasing H3K9me2 methyl-marks on the promoter of ChREBP-regulated genes, Phf2 facilitates incorporation of metabolic precursors into mono-unsaturated fatty acids, leading to hepatosteatosis development in the absence of inflammation and insulin resistance. Moreover, the Phf2-mediated activation of the transcription factor NF-E2-related factor 2 (Nrf2) further reroutes glucose fluxes toward the pentose phosphate pathway and glutathione biosynthesis, protecting the liver from oxidative stress and fibrogenesis in response to diet-induced obesity. Overall, our findings establish a downstream epigenetic checkpoint, whereby Phf2, through facilitating H3K9me2 demethylation at specific gene promoters, protects liver from the pathogenesis progression of NAFLD.rom the pathogenesis progression of NAFLD.)
Wu 2018 Adv Sci + (Aberrant mitochondrial energy transfer und … Aberrant mitochondrial energy transfer underlies prevalent chronic health conditions, including cancer, cardiovascular, and neurodegenerative diseases. Mitochondrial transplantation represents an innovative strategy aimed at restoring favorable metabolic phenotypes in cells with dysfunctional energy metabolism. While promising, significant barriers to ''in vivo'' translation of this approach abound, including limited cellular uptake and recognition of mitochondria as foreign. The objective is to functionalize isolated mitochondria with a biocompatible polymer to enhance cellular transplantation and eventual ''in vivo'' applications. Herein, it is demonstrated that grafting of a polymer conjugate composed of dextran with triphenylphosphonium onto isolated mitochondria protects the organelles and facilitates cellular internalization compared with uncoated mitochondria. Importantly, mitochondrial transplantation into cancer and cardiovascular cells has profound effects on respiration, mediating a shift toward improved oxidative phosphorylation, and reduced glycolysis. These findings represent the first demonstration of polymer functionalization of isolated mitochondria, highlighting a viable strategy for enabling clinical applications of mitochondrial transplantation.ications of mitochondrial transplantation.)
Scrima 2020 bioRxiv + (Abnormal hemoglobins can have major conseq … Abnormal hemoglobins can have major consequences for tissue delivery of oxygen. Correct diagnosis of hemoglobinopathies with altered oxygen affinity requires a determination of hemoglobin oxygen dissociation curve (ODC), which relates the hemoglobin oxygen saturation to the partial pressure of oxygen in the blood. Determination of the ODC of human hemoglobin is typically carried out under conditions in which hemoglobin is in equilibrium with O2 at each partial pressure. However, in the human body due to the fast transit of RBCs through tissues hemoglobin oxygen exchanges occur under non-equilibrium conditions. We describe the determination of non-equilibrium ODC, and show that under these conditions Hb cooperativity has two apparent components in the Adair, Perutz, and MWC models of Hb. The first component, which we call sequential cooperativity, accounts for ∼70% of Hb cooperativity, and emerges from the constraint of sequential binding that is shared by the three models. The second component, which we call conformational cooperativity, accounts for ∼30% of Hb cooperativity, and is due either to a conformational equilibrium between low affinity and high affinity tetramers (as in the MWC model), or to a conformational change from low to high affinity once two of the tetramer sites are occupied (Perutz model).two of the tetramer sites are occupied (Perutz model).)
Szabo 2020 Int J Mol Sci + (Abnormal tau protein aggregation in the br … Abnormal tau protein aggregation in the brain is a hallmark of tauopathies, such as frontotemporal lobar degeneration and Alzheimer's disease. Substantial evidence has been linking tau to neurodegeneration, but the underlying mechanisms have yet to be clearly identified. Mitochondria are paramount organelles in neurons, as they provide the main source of energy (adenosine triphosphate) to these highly energetic cells. Mitochondrial dysfunction was identified as an early event of neurodegenerative diseases occurring even before the cognitive deficits. Tau protein was shown to interact with mitochondrial proteins and to impair mitochondrial bioenergetics and dynamics, leading to neurotoxicity. In this review, we discuss in detail the different impacts of disease-associated tau protein on mitochondrial functions, including mitochondrial transport, network dynamics, mitophagy and bioenergetics. We also give new insights about the effects of abnormal tau protein on mitochondrial neurosteroidogenesis, as well as on the endoplasmic reticulum-mitochondria coupling. A better understanding of the pathomechanisms of abnormal tau-induced mitochondrial failure may help to identify new targets for therapeutic interventions.new targets for therapeutic interventions.)
Valis 2017 Oncotarget + (Abnormalities in cancer metabolism represe … Abnormalities in cancer metabolism represent potential targets for cancer therapy. We have recently identified a natural compound Quambalarine B (QB), which inhibits proliferation of several leukemic cell lines followed by cell death. We have predicted ubiquinone binding sites of mitochondrial respiratory complexes as potential molecular targets of QB in leukemia cells. Hence, we tracked the effect of QB on leukemia metabolism by applying several omics and biochemical techniques. We have confirmed the inhibition of respiratory complexes by QB and found an increase in the intracellular AMP levels together with respiratory substrates. Inhibition of mitochondrial respiration by QB triggered reprogramming of leukemic cell metabolism involving disproportions in glycolytic flux, inhibition of proteins O-glycosylation, stimulation of glycine synthesis pathway, and pyruvate kinase activity, followed by an increase in pyruvate and a decrease in lactate levels. Inhibition of mitochondrial complex I by QB suppressed folate metabolism as determined by a decrease in formate production. We have also observed an increase in cellular levels of several amino acids except for aspartate, indicating the dependence of Jurkat (T-ALL) cells on aspartate synthesis. These results indicate blockade of mitochondrial complex I and II activity by QB and reduction in aspartate and folate metabolism as therapeutic targets in T-ALL cells. Anti-cancer activity of QB was also confirmed during ''in vivo'' studies, suggesting the therapeutic potential of this natural compound.peutic potential of this natural compound.)
Roy Chowdhury 2018 Mol Cell Neurosci + (Abnormalities in mitochondrial function un … Abnormalities in mitochondrial function under diabetic conditions can lead to deficits in function of cortical neurons and their support cells exhibiting a pivotal role in the pathogenesis of several neurodegenerative disorders, including Alzheimer's disease. We aimed to assess mitochondrial respiration rates and membrane potential or H2O2 generation simultaneously and expression of proteins involved in mitochondrial dynamics, ROS scavenging and AMPK/SIRT/PGC-1α pathway activity in cortex under diabetic conditions.Cortical mitochondria from streptozotocin (STZ)-induced type 1 diabetic rats or mice, and aged-matched controls were used for simultaneous measurements of mitochondrial respiration rates and mitochondrial membrane potential (mtMP) or H2O2 using Oroboros oxygraph. Measurements of enzymatic activities of respiratory complexes were performed using spectophotometry. Protein levels in cortical mitochondria and homogenates were determined by Western blotting.Mitochondrial coupled respiration rates and FCCP-induced uncoupled respiration rates were significantly decreased in mitochondria of cortex of STZ-diabetic rats compared to controls. The mtMP in the presence of ADP was significantly depolarized and succinate-dependent respiration rates and H2O2 were significantly diminished in cortical mitochondria of diabetic animals compared to controls, accompanied with reduced expression of CuZn- and Mn-superoxide dismutase. The enzymatic activities of Complex I, II, and IV and protein levels of certain components of Complex I and II, mitofusin 2 (Mfn2), dynamin-related protein 1 (DRP1), P-AMPK, SIRT2 and PGC-1α were significantly diminished in diabetic cortex.Deficits in mitochondrial function, dynamics, and antioxidant capabilities putatively mediated through sub-optimal AMPK/SIRT/PGC-1α signaling, are involved in the development of early sub-clinical neurodegeneration in the cortex under diabetic conditions.Copyright © 2018. Published by Elsevier Inc.degeneration in the cortex under diabetic conditions. Copyright © 2018. Published by Elsevier Inc.)
Jaramillo-Jimenez 2023 Mitochondrion + (Abnormalities in the Tri-Carboxylic-Acid ( … Abnormalities in the Tri-Carboxylic-Acid (TCA) cycle have been documented in dementia. Through network analysis, TCA cycle metabolites could indirectly reflect known dementia-related abnormalities in biochemical pathways, and key metabolites might be associated with prognosis. This study analyzed TCA cycle metabolites as predictors of cognitive decline in a mild dementia cohort and explored potential interactions with the diagnosis of Lewy Body Dementia (LBD) or Alzheimer's Disease (AD) and APOE-ε4 genotype. We included 145 mild dementia patients (LBD = 59; AD = 86). Serum TCA cycle metabolites were analyzed at baseline, and partial correlation networks were conducted. Cognitive performance was measured annually over 5-years with the Mini-mental State Examination. Longitudinal mixed-effects Tobit models evaluated each baseline metabolite as a predictor of 5-years cognitive decline. APOE-ε4 and diagnosis interactions were explored. Results showed comparable metabolite concentrations in LBD and AD. Multiple testing corrected networks showed larger coefficients for a negative correlation between pyruvate - succinate and positive correlations between fumarate - malate and citrate - Isocitrate in both LBD and AD. In the total sample, adjusted mixed models showed significant associations between baseline citrate concentration and longitudinal MMSE scores. In APOE-ε4 carriers, baseline isocitrate predicted MMSE scores. We conclude that, in mild dementia, serum citrate concentrations could be associated with subsequent cognitive decline, as well as isocitrate concentrations in APOE-ε4 carriers. Downregulation of enzymatic activity in the first half of the TCA cycle (decarboxylating dehydrogenases), with upregulation in the latter half (dehydrogenases only), might be indirectly reflected in serum TCA cycle metabolites' networks. in serum TCA cycle metabolites' networks.)
Ahluwalia 2017 Sci Rep + (About two decades ago, West and coworkers … About two decades ago, West and coworkers established a model which predicts that metabolic rate follows a three quarter power relationship with the mass of an organism, based on the premise that tissues are supplied nutrients through a fractal distribution network. Quarter power scaling is widely considered a universal law of biology and it is generally accepted that were in-vitro cultures to obey allometric metabolic scaling, they would have more predictive potential and could, for instance, provide a viable substitute for animals in research. This paper outlines a theoretical and computational framework for establishing quarter power scaling in three-dimensional spherical constructs in-vitro, starting where fractal distribution ends. Allometric scaling in non-vascular spherical tissue constructs was assessed using models of Michaelis Menten oxygen consumption and diffusion. The models demonstrate that physiological scaling is maintained when about 5 to 60% of the construct is exposed to oxygen concentrations less than the Michaelis Menten constant, with a significant concentration gradient in the sphere. The results have important implications for the design of downscaled in-vitro systems with physiological relevance.itro systems with physiological relevance.)
Skalska 2009 Int J Mol Sci + (Abstract: The mitochondrial response to ch … Abstract: The mitochondrial response to changes of cytosolic calcium concentration has a strong impact on neuronal cell metabolism and viability. We observed that Ca2+ additions to isolated rat brain mitochondria induced in potassium ion containing media a mitochondrial membrane potential depolarization and an accompanying increase of mitochondrial respiration. These Ca2+ effects can be blocked by iberiotoxin and charybdotoxin, well known inhibitors of large conductance potassium channel (BKCa channel). Furthermore, NS1619 – a BKCa channel opener – induced potassium ion–specific effects on brain mitochondria similar to those induced by Ca2+. These findings suggest the presence of a calcium-activated, large conductance potassium channel (sensitive to charybdotoxin and NS1619), which was confirmed by reconstitution of the mitochondrial inner membrane into planar lipid bilayers. The conductance of the reconstituted channel was 265 pS under gradient (50/450 mM KCl) conditions. Its reversal potential was equal to 50 mV, which proved that the examined channel was cation-selective. We also observed immunoreactivity of anti-β4 subunit (of the BKCa channel) antibodies with ~26 kDa proteins of rat brain mitochondria. Immunohistochemical analysis confirmed the predominant occurrence of anti-β4 subunit in neuronal mitochondria. We hypothesize that the mitochondrial BKCa channel represents a calcium sensor, which can contribute to neuronal signal transduction and survival.hannel represents a calcium sensor, which can contribute to neuronal signal transduction and survival.)
Klein 2018 Int J Digit Libr + (Academic publishers claim that they add va … Academic publishers claim that they add value to scholarly communications by coordinating reviews and contributing and enhancing text during publication. These contributions come at a considerable cost: US academic libraries paid $1.7 billion for serial subscriptions in 2008 alone. Library budgets, in contrast, are flat and not able to keep pace with serial price inflation. We have investigated the publishers’ value proposition by conducting a comparative study of pre-print papers from two distinct science, technology, and medicine corpora and their final published counterparts. This comparison had two working assumptions: (1) If the publishers’ argument is valid, the text of a pre-print paper should vary measurably from its corresponding final published version, and (2) by applying standard similarity measures, we should be able to detect and quantify such differences. Our analysis revealed that the text contents of the scientific papers generally changed very little from their pre-print to final published versions. These findings contribute empirical indicators to discussions of the added value of commercial publishers and therefore should influence libraries’ economic decisions regarding access to scholarly publications.egarding access to scholarly publications.)
Teixeira 2022 J Gen Philos Sci + (Academic publishing is undergoing a highly … Academic publishing is undergoing a highly transformative process, and many established rules and value systems that are in place, such as traditional peer review (TPR) and preprints, are facing unprecedented challenges, including as a result of post-publication peer review. The integrity and validity of the academic literature continue to rely naively on blind trust, while TPR and preprints continue to fail to effectively screen out errors, fraud, and misconduct. Imperfect TPR invariably results in imperfect papers that have passed through varying levels of rigor of screening and validation. If errors or misconduct were not detected during TPR's editorial screening, but are detected at the post-publication stage, an opportunity is created to correct the academic record. Currently, the most common forms of correcting the academic literature are errata, corrigenda, expressions of concern, and retractions or withdrawals. Some additional measures to correct the literature have emerged, including manuscript versioning, amendments, partial retractions and retract and replace. Preprints can also be corrected if their version is updated. This paper discusses the risks, benefits and limitations of these forms of correcting the academic literature.rms of correcting the academic literature.)
Coelho 2016 Oncol Rep + (Acceleration of glycolysis is a characteri … Acceleration of glycolysis is a characteristic of neoplasia. Previous studies have shown that a metabolic shift occurs in many tumors and correlates with a negative prognosis. The present study aimed to investigate the glycolytic profile of thyroid carcinoma cell lines. We investigated glycolytic and oxidative parameters of two thyroid carcinoma papillary cell lines (BCPAP and TPC1) and the non-tumor cell line NTHY-ori. All carcinoma cell lines showed higher rates of glycolysis efficiency, when compared to NTHY-ori, as assessed by a higher rate of glucose consumption and lactate production. The BCPAP cell line presented higher rates of growth, as well as elevated intracellular ATP levels, compared to the TPC1 and NTHY-ori cells. We found that glycolysis and activities of pentose phosphate pathway (PPP) regulatory enzymes were significantly different among the carcinoma cell lines, particularly in the mitochondrial hexokinase (HK) activity which was higher in the BCPAP cells than that in the TPC1 cell line which showed a balanced distribution of HK activity between cytoplasmic and mitochondrial subcellular localizations. However, TPC1 had higher levels of glucose‑6-phosphate dehydrogenase activity, suggesting that the PPP is elevated in this cell type. Using high resolution respirometry, we observed that the Warburg effect was present in the BCPAP and TPC1 cells, characterized by low oxygen consumption and high reactive oxygen species production. Overall, these results indicate that both thyroid papillary carcinoma cell lines showed a glycolytic profile. Of note, BCPAP cells presented some relevant differences in cell metabolism compared to TPC1 cells, mainly related to higher mitochondrial-associated HK activity.gher mitochondrial-associated HK activity.)
Acclimatization and High Altitude Illness - Facts and Myths 2017 Brixen Dolomites IT + (Acclimatization and High Altitude Illness - Facts and Myths, Brixen Dolomites, IT)
Arias-Reyes 2023 MitoFit + (Acclimatization to high altitude relies on … Acclimatization to high altitude relies on adjustments of cellular metabolism that optimize oxygen use and energy production. In tissues with high energy demand and almost exclusive reliance on aerobic metabolism such as the brain, hypoxia is a particularly strong stressor, however, strategies to adjust metabolic pathways for successful high-altitude acclimatization remain poorly understood. Compared to SD rats, FVB mice show successful acclimatization to high altitude, we, therefore, used this model to investigate metabolic adjustments in the retrosplenial cortex (a key area of the brain involved in spatial learning and navigation) in normoxia and during acclimatization to hypoxia (12 % O2 – 1, 7, and 21 days). We measured in simultaneous the rates of ATP synthesis and O2 consumption in fresh permeabilized brain samples by coupled high-resolution respirometry and fluorometry. We quantified the citrate synthase (CS) activity as an index of mitochondrial content, the transcriptional regulation of genes involved in mitochondrial dynamics; and the activity of enzymes representative of the glycolytic, aerobic, and anaerobic metabolism. Our findings show that acclimatization to hypoxia significantly increases ATP synthesis in mice and to a lower extent in rats. In mice, this occurs in parallel with a reduction of O2 consumption, and a three-fold increase in the P»/O ratio. In rats, a six-fold increase in CS activity and altered mitochondrial dynamics gene expression are evident. Finally, activities of glycolytic, aerobic, or anaerobic enzymes remain overall unchanged in both species except for a transient glycolytic and anaerobic peak at day 7 in mice. Altogether, our results show that chronic hypoxia optimizes the efficiency of mitochondrial ATP synthesis in the retrosplenial cortex of mice. Contrastingly, rats sustain the production of ATP only by increasing mitochondrial content and altering mitochondrial dynamics, suggesting drastic mitochondrial malfunctions. ing mitochondrial dynamics, suggesting drastic mitochondrial malfunctions. )
Schoenfeld 2016 J Cereb Blood Flow Metab + (According to recent reports, systemic trea … According to recent reports, systemic treatment of rats with methylpalmoxirate (carnitine palmitoyltransferase-1 inhibitor) decreased peroxidation of polyunsaturated fatty acids in brain tissue. This was taken as evidence of mitochondrial β-oxidation in brain, thereby contradicting long-standing paradigms of cerebral metabolism, which claim that β-oxidation of activated fatty acids has minor importance for brain energy homeostasis. We addressed this controversy. Our experiments are the first direct experimental analysis of this question. We fueled isolated brain mitochondria or rat brain astrocytes with octanoic acid, but octanoic acid does not enhance formation of reactive oxygen species, neither in isolated brain mitochondria nor in astrocytes, even at limited hydrogen delivery to mitochondria. Thus, octanoic acid or l-octanoylcarnitine does not stimulate H2O2 release from brain mitochondria fueled with malate, in contrast to liver mitochondria (2.25-fold rise). This does obviously not support the possible occurrence of β-oxidation of the fatty acid octanoate in the brain. We conclude that a proposed inhibition of β-oxidation does not seem to be a helpful strategy for therapies aiming at lowering oxidative stress in cerebral tissue. This question is important, since oxidative stress is the cause of neurodegeneration in numerous neurodegenerative or inflammatory disease situations.© The Author(s) 2016.erative or inflammatory disease situations. © The Author(s) 2016.)
Roskams T Falk Workshop Inflammation & Cancer + (According to the cancer stem cell concept, … According to the cancer stem cell concept, hepatocellular carcinoma (HCC) consists of a hierarchy of cell populations, of which the very small cancer stem cell population is the one that has the growth and metastatic potential of the tumour. The other neoplastic cells are offspring of the cancer stem cells and each can differentiate a little differently, according to the local microenvironment in each part of the tumor, hence explaining the enormous phenotypic heterogeneity of a neoplasm. Current therapeutic strategies mostly target rapidly growing differentiated tumour cells. However the results are often unsatisfactory because of the chemoresistance of HCC. New therapies targeting cancer stem cells should therefore be developed. A prerequisite is a good understanding of the mechanisms of activation and differentiation of normal stem/progenitor cells in normal and diseased liver. Hepatocytes and cholangiocytes have stem cell features, but also progenitor cells, located in the smallest branches of the biliary tree. These cells are especially activated in the cirrhotic stage of chronic liver diseases, the stage in which HCC develops. HCC with progenitor cell features, possibly reflecting a progenitor cell origin, have a very bad prognosis and therefore should be recognized and treated accordingly.uld be recognized and treated accordingly.)
Huetter 2007 Aging Cell + (According to the free radical theory of ag … According to the free radical theory of aging, reactive oxygen species (ROS) act as a driving force of the aging process, and it is generally believed that mitochondrial dysfunction is a major source of increased oxidative stress in tissues with high content of mitochondria, such as muscle or brain. However, recent experiments in mouse models of premature aging have questioned the role of mitochondrial ROS production in premature aging. To address the role of mitochondrial impairment and ROS production for aging in human muscles, we have analyzed mitochondrial properties in muscle fibres isolated from the vastus lateralis of young and elderly donors. Mitochondrial respiratory functions were addressed by high-resolution respirometry, and ROS production was analyzed by in situ staining with the redox-sensitive dye dihydroethidium. We found that aged human skeletal muscles contain fully functional mitochondria and that the level of ROS production is higher in young compared to aged muscle. Accordingly, we could not find any increase in oxidative modification of proteins in muscle from elderly donors. However, the accumulation of lipofuscin was identified as a robust marker of human muscle aging. The data support a model, where ROS-induced molecular damage is continuously removed, preventing the accumulation of dysfunctional mitochondria despite ongoing ROS production.tochondria despite ongoing ROS production.)
Huisamen 2015 Abstract MiPschool Cape Town 2015 + (According to the latest statistics, variou … According to the latest statistics, various cardiovascular diseasesaccounted for 8.3% of natural deaths in South Africa during 2013,ranking the 6th place as cause of mortality. With the efficiencyof therapies aimed at decreasing mortality from heart disease, lifeexpectancy increased. As result of this, the focus of recent researchchanged towards understanding the energy demands of the heart inorder to optimize function. Because of its high energetic needs, thehuman heart utilizes between 3.5 and 6 kg of ATP per day to function.This is produced by its mitochondrial populations which occupy up to50% of the volume of a cardiomyocyte. A close link therefore existsbetween mitochondrial dysfunction and heart disease. In addition, thereis growing recognition that inborn errors of metabolism can influencecardiomyocyte dysfunction [1] and that primary inherited mitochondrialdiseases display a full spectrum of cardiac disorders [2].ATM is a 350kDa serine/threonine protein kinase displaying homologiesto the large protein family of PI3-Kinases, although it lacks the ability tophosphorylate lipids [3]. It came under scrutiny because of the disease,Ataxia-telangiectasie (A-T), which is an autosomal, recessive disorderthat progressively affects multiple organs. This disease is caused bymutations in the Atm gene, resulting in lack or inactivation of the ATMprotein [4]. ATM in the cell can be localized to the nucleus, cytoplasm ofmitochondria.We became interested in myocardial ATM because it was found thatskeletal muscle of insulin resistant, obese rats had dramatically reducedlevels of the so-called ATM protein, in association with the well-knownreduced activation of the insulin/ phosphatidylinositol 3 kinases (PI3-kinase)/PKB/Akt pathway, which is the main mechanism of relaying themetabolic effects of insulin [5]. Foster et al [6] found structural and functional changes in the hearts of ATM KO mice, using echocardiography andDoppler echocardiography.The mitochondrial association of ATM protein kinase plays an importantrole in its integrity and functioning such that ATM deficiency results indefects in mitochondrial respiration [7]. ATM also regulates mitochondrialbiogenesis and DNA content [8]. In addition, it was demonstrated that amitochondria-targeted antioxidant MitoQ, could decrease the features ofthe metabolic syndrome in ATM+/-ApoE-/- mice [9]. This may be becauseone of the mechanisms known to activate the ATM protein is increasedoxidative stress. Activated ATM initiates an anti-oxidant response basedon a metabolic shift while, in fibroblast cell lines, inactivation of ATMis associated with increased ROS levels followed by expression andactivation of the transcription factor HIF-1alpha [10]. the transcription factor HIF-1alpha [10].)
Kozieł 2011 J Invest Dermatol + (According to the mitochondrial theory of a … According to the mitochondrial theory of aging, reactive oxygen species (ROS) derived primarily from mitochondria cause cumulative oxidative damage to various cellular molecules and thereby contribute to the aging process. On the other hand, a pivotal role of the proteasome, as a main proteolytic system implicated in the degradation of oxidized proteins during aging, is suggested. In this study, we analyzed mitochondrial function in dermal fibroblasts derived from biopsies obtained from healthy young, middle-aged, and old donors. We also determined proteasome activity in these cells, using a degron-destabilized green fluorescent protein (GFP)-based reporter protein. We found a significant decrease in mitochondrial membrane potential in samples from aged donors, accompanied by a significant increase in ROS levels. Respiratory activity was not significantly altered with donor age, probably reflecting genetic variation. Proteasome activity was significantly decreased in fibroblasts from middle-aged donors compared with young donors; fibroblasts derived from the oldest donors displayed a high heterogeneity in this assay. We also found intraindividual coregulation of mitochondrial and proteasomal activities in all human fibroblast strains tested, suggesting that both systems are interdependent. Accordingly, pharmacological inhibition of the proteasome led to decreased mitochondrial function, whereas inhibition of mitochondrial function in turn reduced proteasome activity.ction in turn reduced proteasome activity.)
Schiffer 2013 Abstract MiP2013 + (According to the rate-of-living and oxidat … According to the rate-of-living and oxidative damage theory of aging, extended lifespan is predicted by low energy metabolism and low reactive oxygen species production rates. Recently, several studies show that dietary inorganic nitrate mainly present in vegetables can reduce oxygen consumption during physical exercise in humans [1] and contribute to attenuated oxidative stress in animal models of disease [2]. Nitrate accumulates in saliva and is bioactivated through reduction to nitrite by oral bacteria. We examined the effects of dietary nitrate on basal metabolic rate (BMR) and markers of oxidative stress in man using a double-blind, randomized cross over design. 15 young healthy males volunteered and indirect calorimetry was used to determine basal metabolic rate after three days of dietary intervention with sodium nitrate (NaNO3, 0.1 mmol∙kg-1∙day-1) or placebo (NaCl). The administered amount of nitrate resembles what is found in 100-300 g of nitrate rich vegetables such as beetroot or spinach. The intervention reduced BMR by 4.3% after nitrate administration compared with placebo (p<0.02). A strong negative correlation was found between the change in salivary nitrate and the change in BMR (r2=0.72; p<0.002). In addition, nitrate supplementation reduced plasma levels of malondialdehyde, indicating lower oxidative stress as a result of the intervention. Thyroid hormone status was unaffected.The cuisines of cultures known for their longevity are usually rich in vegetables and future studies will reveal whether this life span extension is linked to the high nitrate content in this food group. to the high nitrate content in this food group.)
Nelson 2016 J Fish Biol + (Accounting for energy use by fishes has be … Accounting for energy use by fishes has been taking place for over 200 years. The original, and continuing gold standard for measuring energy use in terrestrial animals, is to account for the waste heat produced by all reactions of metabolism, a process referred to as direct calorimetry. Direct calorimetry is not easy or convenient in terrestrial animals and is extremely difficult in aquatic animals. Thus, the original and most subsequent measurements of metabolic activity in fishes have been measured via indirect calorimetry. Indirect calorimetry takes advantage of the fact that oxygen is consumed and carbon dioxide is produced during the catabolic conversion of foodstuffs or energy reserves to useful ATP energy. As measuring [CO2] in water is more challenging than measuring [O2], most indirect calorimetric studies on fishes have used the rate of O2 consumption. To relate measurements of O2 consumption back to actual energy usage requires knowledge of the substrate being oxidized. Many contemporary studies of O2 consumption by fishes do not attempt to relate this measurement back to actual energy usage. Thus, the rate of oxygen consumption has become a measurement in its own right that is not necessarily synonymous with metabolic rate. Because all extant fishes are obligate aerobes (many fishes engage in substantial net anaerobiosis, but all require oxygen to complete their life cycle), this discrepancy does not appear to be of great concern to the fish biology community, and reports of fish oxygen consumption, without being related to energy, have proliferated. Unfortunately, under some circumstances, these measures can be quite different from one another. A review of the methodological history of the two measurements and a look towards the future are included.view of the methodological history of the two measurements and a look towards the future are included.)
Fitzgerald 2024 J Cachexia Sarcopenia Muscle + (Accumulating evidence has demonstrated tha … Accumulating evidence has demonstrated that chronic tobacco smoking directly contributes to skeletal muscle dysfunction independent of its pathological impact to the cardiorespiratory systems. The mechanisms underlying tobacco smoke toxicity in skeletal muscle are not fully resolved. In this study, the role of the aryl hydrocarbon receptor (AHR), a transcription factor known to be activated with tobacco smoke, was investigated.AHR related gene (mRNA) expression was quantified in skeletal muscle from adult controls and patients with chronic obstructive pulmonary disease (COPD), as well as mice with and without cigarette smoke exposure. Utilizing both skeletal muscle-specific AHR knockout mice exposed to chronic repeated (5 days per week for 16 weeks) cigarette smoke and skeletal muscle-specific expression of a constitutively active mutant AHR in healthy mice, a battery of assessments interrogating muscle size, contractile function, mitochondrial energetics, and RNA sequencing were employed.Skeletal muscle from COPD patients (N = 79, age = 67.0 ± 8.4 years) had higher levels of AHR (P = 0.0451) and CYP1B1 (P < 0.0001) compared to healthy adult controls (N = 16, age = 66.5 ± 6.5 years). Mice exposed to cigarette smoke displayed higher expression of Ahr (P = 0.008), Cyp1b1 (P < 0.0001), and Cyp1a1 (P < 0.0001) in skeletal muscle compared to air controls. Cigarette smoke exposure was found to impair skeletal muscle mitochondrial oxidative phosphorylation by ~50% in littermate controls (Treatment effect, P < 0.001), which was attenuated by deletion of the AHR in muscle in male (P = 0.001), but not female, mice (P = 0.37), indicating there are sex-dependent pathological effects of smoking-induced AHR activation in skeletal muscle. Viral mediated expression of a constitutively active mutant AHR in the muscle of healthy mice recapitulated the effects of cigarette smoking by decreasing muscle mitochondrial oxidative phosphorylation by ~40% (P = 0.003).These findings provide evidence linking chronic AHR activation secondary to cigarette smoke exposure to skeletal muscle bioenergetic deficits in male, but not female, mice. AHR activation is a likely contributor to the decline in muscle oxidative capacity observed in smokers and AHR antagonism may provide a therapeutic avenue aimed to improve muscle function in COPD.eutic avenue aimed to improve muscle function in COPD.)