O2k-Publications: Topics

From Bioblast
Jump to navigation Jump to search

News - Agenda         O2k-Open Support         O2k-Publications         O2k-Workshops and Events         O2k-Network         O2k-Feedback         NextGen-O2k



O2k-Publications: Topics

Mitochondria and Cell Research - the Oroboros Ecosystem
O2k-Publications: chronological
Publications in the MiPMap


» O2k-Publications alert - » Recent O2k-Publications
» O2k-briefs
» O2k-Publications - chronological: 4244


Mitochondrial physiology: MiP areas

# O2k-Publications MitoPedia: Comment O2k Total
1 mt-Medicine (356 entries) 356 499
2 Exercise physiology;nutrition;life style 696 971
3 Comparative MiP;environmental MiP 308 454
4 Pharmacology;toxicology 775 929
5 mt-Biogenesis;mt-density 243 325
6 Genetic knockout;overexpression 576 642
7 Instruments;methods 255 389


Pathological states

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Aging;senescence 248 383
2 Alzheimer's 65 89
3 Autism 6 10
4 Cancer 324 432
5 Cardiovascular 179 248
6 COPD 9 12
7 Diabetes 331 433
8 Inherited 61 93
9 Infectious 44 61
10 Myopathy 60 71
11 Neurodegenerative 155 216
12 Obesity 228 370
13 Parkinson's 58 93
14 Sepsis 69 79
15 Other 250 321


Stress conditions

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Cell death White, brown, beige fat tissue 92 153
2 Cryopreservation 38 61
3 Hypoxia 92 185
4 Ischemia-reperfusion 306 410
5 Oxidative stress;RONS 551 779
6 Permeability transition 70 91
7 Temperature: hypothermia; hyperthermia 90 110


Organisms

Mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Human 1324 1895
2 Pig 87 99
3 Horse 26 33
4 Bovines 21 69
5 Cat 2 4
6 Dog 12 30
7 Rabbit 16 21
8 Mouse 1213 1425
9 Rat 829 1068
10 Guinea pig 22 35
11 Other mammals including only mammals that are not listed as mammalian species above 49 80
Model organisms
# O2k-Publications MitoPedia: Comment O2k Total
1 Chicken Birds) 4 6
2 Zebrafish Fishes) 11 17
3 Drosophila Hexapods) 58 75
4 Caenorhabditis elegans Nematodes) 22 30
5 Artemia Crustaceans) 11 18
6 Saccharomyces cerevisiae Fungi) 59 83
7 Comparative MiP 308 454


Non-mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Birds Chicken) 11 22
2 Reptiles turtles, lizards, snakes, crocodiles, alligators 12 17
3 Amphibians frogs, toads, salamanders 10 15
4 Fishes bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish 107 143
5 Hexapods insects, springtails; » Drosophila 32 41
6 Crustaceans crabs, shrimp, barnacles, etc.; » Artemia 19 39
7 Annelids polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches 3 20
8 Molluscs gastropods, cephalopods, bivalves 22 39
9 Nematodes » Caenorhabditis elegans 5 11
10 Other invertebrates urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ... 11 18
11 Fungi yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae 50 61
12 Plants 32 63
13 Protists amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc. 36 51
14 Eubacteria true bacteria, cyanobacteria, spirochetes 23 42
15 Archaea archaebacteria 0 7


Tissues and cells

Tissues - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Fat White, brown, beige fat tissue 164 228
2 Genital 87 118
3 Heart 666 865
4 Kidney 132 164
5 Liver 592 769
6 Lung;Gill 53 72
7 Nervous system 558 674
8 Skeletal muscle 1007 1252


Cell types - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Blood cells 230 285
2 Endothelial;epithelial;mesothelial cell 238 272
3 Fibroblast 193 252
4 Islet cell;pancreas;thymus 48 60
5 Leukemia 22 25
6 Lymphocyte 54 71
7 Platelets 110 128
8 Stem cells 35 47


Cell lines - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 CHO 13 15
2 HEK 86 106
3 HeLa 35 52
4 Neuroblastoma 36 41
5 HUVEC 19 22
6 Macrophage-derived cell lines 25 34
7 Other cells and cell lines 282 326


Preparations

# O2k-Publications MitoPedia: Comment O2k Total
1 Living organism 48 238
2 Intact organ 22 36
3 Living cells 1050 1181
4 Permeabilized cells 644 677
5 Permeabilized tissue 1014 1100
6 Homogenate 329 367
7 Isolated mitochondria 1165 1456
8 SMP Submitochondrial particles 10 28
9 Chloroplasts 2 10
10 Enzyme 39 74
11 Oxidase and biochemical oxidation 38 48


Enzymes

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Adenine nucleotide translocase ANT 21 25
2 Complex I CI 447 535
3 Complex II;succinate dehydrogenase CII 393 465
4 Complex III CIII 297 346
5 Complex IV;cytochrome c oxidase CIV 402 473
6 Complex V;ATP synthase CV 218 258
7 mt-Inner membrane transporter 31 43
8 Marker enzyme 57 80
9 Supercomplex 44 60
10 TCA cycle and matrix dehydrogenases Tricarboxylic acid cycle 80 105
11 Uncoupling protein 59 64


Regulation

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 ADP ADP kinetics 147 197
2 ATP production 75 112
3 Aerobic glycolysis 46 90
4 Amino acid 9 19
5 Calcium 98 165
6 Coupling efficiency;uncoupling 80 145
7 Cyt c Cytochrome c 40 53
8 Fatty acid FA substrate kinetics 120 144
9 Flux control 52 83
10 Inhibitor Inhibitor kinetics 127 158
11 Ion;substrate transport 57 104
12 mt-Membrane potential Mitochondrial membrane potential
Questions.jpg


Click to expand or collaps
Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>
Fundamental relationships
» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


104 158
13 Oxygen kinetics 102 140
14 Q-junction effect 13 55
15 Redox state 50 85
16 Substrate Fuel substrate kinetics 179 231
17 Temperature Temperature dependence 67 92
18 Threshold;excess capacity 27 30
19 Uncoupler Uncoupler kinetics 53 68


Coupling-control

# O2k-Publications MitoPedia: Coupling-control states Comment O2k Total
1 P OXPHOS OXPHOS capacity Oxidative phosphorylation capacity, saturating [ADP] 2592 2803
2 R ROUTINE ROUTINE respiration Physiological state, living cells 801 883
3 E ET ET capacity Maximal noncoupled respiration 1838 1936
4 L LEAK LEAK respiration Resting state, non-phosphorylating respiration 2300 2444


Pathway control

# O2k-Publications MitoPedia: Electron-transfer-pathway states Comment O2k Total
1 F F-pathway control state Fatty acid oxidation, level 5 545 643
2 N N-pathway control state NADH-linked, level 4 2211 2349
3 S S-pathway control state Succinate-linked, level 3 1506 1587
4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 142 163
5 DQ Duorquinol-linked, level 2 23 27
6 CIV Complex IV single step Ascorbate & TMPD, level 1 621 648
7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 1385 1437
8 Other 129 145
9 ROX ROX Residual oxygen consumption includes non-mitochondrial respiration 1320 1370


MiPMap combinations - examples

Examples for specific combinations
# O2k-Publications MitoPedia: Comment O2k Total
1 O2k-Publications: Human skeletal muscle 1007 1252
2 O2k-Publications: Human heart 666 865
3 O2k-Publications: Skeletal muscle - human vs mouse 36 45
Browse data


O2k-Manuals and protocols and specific instrumental applications

# O2k-Publications MitoPedia: Comment O2k Total
1 Oxygraph-2k 4244 4244
2 TIP2k 41 41
3 O2k-Fluorometry 288 293
4 O2k-pH ISE-Module pH
Questions.jpg


Click to expand or collaps


4 5
5 Nitric Oxide 8 8
6 TPP+ O2k-ISE Module Tetraphenylphosphonium
Questions.jpg


Click to expand or collaps
Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>
Fundamental relationships
» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


51 55
7 Ca2+ O2k-ISE Module 7 7
8 O2k-Spectrophotometer 8 8
9 O2k-Manual 20 21
8 O2k-Protocol 62 78
9 Theoretical background 13 69
10 Instruments;methods 255 389
11 O2k-Fluorometry - Fluorophores 21 21
12 PBI Shredder Homogenate preparation 20 22
# O2k-Publications MitoPedia: Comment O2k Total
1 Twin-Flow respirometry 0 21
2 Separate DatLab applications 29 35