O2k-Publications: Topics

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O2k-Publications: Topics

Mitochondria and Cell Research - the Oroboros Ecosystem
O2k-Publications: chronological
Publications in the MiPMap


» O2k-Publications alert - » Recent O2k-Publications
» O2k-briefs
» O2k-Publications - chronological: 3665


Mitochondrial physiology: MiP areas

# O2k-Publications MitoPedia: Comment O2k Total
1 mt-Medicine (353 entries) 353 480
2 Exercise physiology;nutrition;life style 614 858
3 Comparative MiP;environmental MiP 287 423
4 Pharmacology;toxicology 650 782
5 mt-Biogenesis;mt-density 230 304
6 Genetic knockout;overexpression 489 547
7 Instruments;methods 203 298


Pathological states

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Aging;senescence 222 347
2 Alzheimer's 59 80
3 Autism 2 6
4 Cancer 289 387
5 Cardiovascular 144 207
6 COPD 8 11
7 Diabetes 284 383
8 Inherited 60 81
9 Infectious 31 38
10 Myopathy 53 64
11 Neurodegenerative 142 197
12 Obesity 185 320
13 Parkinson's 52 82
14 Sepsis 59 69
15 Other 211 278


Stress conditions

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Cell death White, brown, beige fat tissue 84 141
2 Cryopreservation 33 56
3 Hypoxia 67 99
4 Ischemia-reperfusion 285 387
5 Oxidative stress;RONS 515 720
6 Permeability transition 61 81
7 Temperature: hypothermia; hyperthermia 85 102


Organisms

Mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Human 1154 1647
2 Pig 77 89
3 Horse 23 29
4 Bovines 20 62
5 Cat 2 3
6 Dog 11 28
7 Rabbit 16 20
8 Mouse 1027 1225
9 Rat 740 959
10 Guinea pig 20 33
11 Other mammals including only mammals that are not listed as mammalian species above 46 74
Model organisms
# O2k-Publications MitoPedia: Comment O2k Total
1 Chicken Birds) 4 5
2 Zebrafish Fishes) 11 16
3 Drosophila Hexapods) 48 63
4 Caenorhabditis elegans Nematodes) 16 24
5 Artemia Crustaceans) 11 18
6 Saccharomyces cerevisiae Fungi) 52 72
7 Comparative MiP 287 423


Non-mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Birds Chicken) 11 21
2 Reptiles turtles, lizards, snakes, crocodiles, alligators 10 14
3 Amphibians frogs, toads, salamanders 9 13
4 Fishes bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish 97 126
5 Hexapods insects, springtails; » Drosophila 29 38
6 Crustaceans crabs, shrimp, barnacles, etc.; » Artemia 19 37
7 Annelids polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches 3 16
8 Molluscs gastropods, cephalopods, bivalves 18 28
9 Nematodes » Caenorhabditis elegans 3 8
10 Other invertebrates urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ... 11 15
11 Fungi yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae 48 59
12 Plants 25 45
13 Protists amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc. 28 40
14 Eubacteria true bacteria, cyanobacteria, spirochetes 21 37
15 Archaea archaebacteria 0 6


Tissues and cells

Tissues - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Fat White, brown, beige fat tissue 146 206
2 Genital 77 106
3 Heart 589 768
4 Kidney 115 143
5 Liver 530 686
6 Lung;Gill 46 60
7 Nervous system 494 592
8 Skeletal muscle 891 1106


Cell types - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Blood cells 210 260
2 Endothelial;epithelial;mesothelial cell 207 237
3 Fibroblast 167 213
4 Islet cell;pancreas;thymus 42 52
5 Leukemia 23 26
6 Lymphocyte 48 62
7 Platelets 99 117
8 Stem cells 30 40


Cell lines - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 CHO 13 13
2 HEK 68 86
3 HeLa 27 40
4 Neuroblastoma 32 35
5 HUVEC 19 22
6 Macrophage-derived cell lines 22 31
7 Other cells and cell lines 265 302


Preparations

# O2k-Publications MitoPedia: Comment O2k Total
1 Living organism 38 199
2 Intact organ 21 34
3 Living cells 891 989
4 Permeabilized cells 526 555
5 Permeabilized tissue 895 978
6 Homogenate 277 310
7 Isolated mitochondria 1044 1309
8 SMP Submitochondrial particles 9 21
9 Chloroplasts 1 9
10 Enzyme 38 66
11 Oxidase and biochemical oxidation 37 47


Enzymes

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Adenine nucleotide translocase ANT 20 24
2 Complex I CI 418 502
3 Complex II;succinate dehydrogenase CII 369 437
4 Complex III CIII 282 326
5 Complex IV;cytochrome c oxidase CIV 381 448
6 Complex V;ATP synthase CV 205 243
7 mt-Inner membrane transporter 31 43
8 Marker enzyme 49 69
9 Supercomplex 40 53
10 TCA cycle and matrix dehydrogenases Tricarboxylic acid cycle 74 94
11 Uncoupling protein 57 62


Regulation

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 ADP ADP kinetics 145 189
2 ATP production 69 102
3 Aerobic glycolysis 41 76
4 Amino acid 9 18
5 Calcium 85 119
6 Coupling efficiency;uncoupling 70 130
7 Cyt c Cytochrome c 37 46
8 Fatty acid FA substrate kinetics 115 139
9 Flux control 46 71
10 Inhibitor Inhibitor kinetics 128 156
11 Ion;substrate transport 51 91
12 mt-Membrane potential Mitochondrial membrane potential
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Click to expand or collaps
Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>

.::: Fundamental relationships

» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


91 139
13 Oxygen kinetics 95 126
14 Q-junction effect 6 7
15 Redox state 45 69
16 Substrate Fuel substrate kinetics 173 224
17 Temperature Temperature dependence 57 80
18 Threshold;excess capacity 27 30
19 Uncoupler Uncoupler kinetics 51 66


Coupling control states

# O2k-Publications MitoPedia: Coupling control states Comment O2k Total
1 P OXPHOS OXPHOS capacity Oxidative phosphorylation capacity, saturating [ADP] 2229 2424
2 R ROUTINE ROUTINE respiration Physiological state, living cells 669 728
3 E ET ET-capacity Maximal noncoupled respiration 1532 1614
4 L LEAK LEAK respiration Resting state, non-phosphorylating respiration 1886 2013


Pathway control states

# O2k-Publications MitoPedia: Electron transfer-pathway states Comment O2k Total
1 F F-pathway control state Fatty acid oxidation, level 5 459 552
2 N N-pathway control state NADH-linked, level 4 1864 1983
3 S S-pathway control state Succinate-linked, level 3 1255 1325
4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 115 132
5 DQ Duorquinol-linked, level 2 17 20
6 CIV Complex IV single step Ascorbate & TMPD, level 1 530 555
7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 1150 1195
8 Other 123 138
9 ROX ROX Residual oxygen consumption includes non-mitochondrial respiration 1061 1102


MiPMap combinations - examples

Examples for specific combinations
# O2k-Publications MitoPedia: Comment O2k Total
1 O2k-Publications: Human skeletal muscle 891 1106
2 O2k-Publications: Human heart 589 768
3 O2k-Publications: Skeletal muscle - human vs mouse 36 44
Browse data


O2k-Manuals and protocols and specific instrumental applications

# O2k-Publications MitoPedia: Comment O2k Total
1 Oxygraph-2k 3665 3665
2 TIP2k 41 41
3 O2k-Fluorometry 224 230
4 O2k-pH ISE-Module pH
Questions.jpg


Click to expand or collaps


4 5
5 Nitric Oxide 7 7
6 TPP+ O2k-ISE Module Tetraphenylphosphonium
Questions.jpg


Click to expand or collaps
Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>

.::: Fundamental relationships

» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


46 50
7 Ca2+ O2k-ISE Module 5 5
8 O2k-Spectrophotometer 8 8
9 O2k-Manual 19 20
8 O2k-Protocol 60 76
9 Theoretical background 12 65
10 Instruments;methods 203 298
11 O2k-Fluorometry - Fluorophores 18 18
12 PBI Shredder Homogenate preparation 20 21
# O2k-Publications MitoPedia: Comment O2k Total
1 Twin-Flow respirometry 0 21
2 Separate DatLab applications 26 32