O2k-Publications: Topics

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O2k-Publications: Topics

Mitochondria and Cell Research - the Oroboros Ecosystem
O2k-Publications: chronological
Publications in the MiPMap


» O2k-Publications alert - » Recent O2k-Publications
» O2k-briefs
» O2k-Publications - chronological: 4166


Mitochondrial physiology: MiP areas

# O2k-Publications MitoPedia: Comment O2k Total
1 mt-Medicine (356 entries) 356 496
2 Exercise physiology;nutrition;life style 682 951
3 Comparative MiP;environmental MiP 304 446
4 Pharmacology;toxicology 771 913
5 mt-Biogenesis;mt-density 243 324
6 Genetic knockout;overexpression 571 632
7 Instruments;methods 237 359


Pathological states

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Aging;senescence 245 379
2 Alzheimer's 65 88
3 Autism 6 10
4 Cancer 319 423
5 Cardiovascular 177 246
6 COPD 9 12
7 Diabetes 322 424
8 Inherited 61 82
9 Infectious 43 57
10 Myopathy 60 71
11 Neurodegenerative 154 212
12 Obesity 225 367
13 Parkinson's 56 88
14 Sepsis 67 77
15 Other 247 316


Stress conditions

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Cell death White, brown, beige fat tissue 91 148
2 Cryopreservation 38 61
3 Hypoxia 88 169
4 Ischemia-reperfusion 305 410
5 Oxidative stress;RONS 548 768
6 Permeability transition 68 89
7 Temperature: hypothermia; hyperthermia 89 109


Organisms

Mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Human 1300 1847
2 Pig 85 97
3 Horse 25 32
4 Bovines 21 68
5 Cat 2 4
6 Dog 12 30
7 Rabbit 16 21
8 Mouse 1190 1399
9 Rat 823 1055
10 Guinea pig 22 35
11 Other mammals including only mammals that are not listed as mammalian species above 49 80
Model organisms
# O2k-Publications MitoPedia: Comment O2k Total
1 Chicken Birds) 4 6
2 Zebrafish Fishes) 11 16
3 Drosophila Hexapods) 56 73
4 Caenorhabditis elegans Nematodes) 22 30
5 Artemia Crustaceans) 11 18
6 Saccharomyces cerevisiae Fungi) 59 81
7 Comparative MiP 304 446


Non-mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Birds Chicken) 11 21
2 Reptiles turtles, lizards, snakes, crocodiles, alligators 12 17
3 Amphibians frogs, toads, salamanders 10 15
4 Fishes bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish 106 140
5 Hexapods insects, springtails; » Drosophila 31 40
6 Crustaceans crabs, shrimp, barnacles, etc.; » Artemia 19 39
7 Annelids polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches 3 20
8 Molluscs gastropods, cephalopods, bivalves 22 39
9 Nematodes » Caenorhabditis elegans 5 10
10 Other invertebrates urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ... 11 17
11 Fungi yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae 50 61
12 Plants 29 54
13 Protists amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc. 33 45
14 Eubacteria true bacteria, cyanobacteria, spirochetes 26 45
15 Archaea archaebacteria 0 6


Tissues and cells

Tissues - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Fat White, brown, beige fat tissue 163 226
2 Genital 87 117
3 Heart 657 849
4 Kidney 129 159
5 Liver 582 748
6 Lung;Gill 53 69
7 Nervous system 554 663
8 Skeletal muscle 992 1230


Cell types - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Blood cells 226 281
2 Endothelial;epithelial;mesothelial cell 235 266
3 Fibroblast 189 245
4 Islet cell;pancreas;thymus 46 58
5 Leukemia 22 25
6 Lymphocyte 54 69
7 Platelets 110 128
8 Stem cells 35 47


Cell lines - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 CHO 13 13
2 HEK 78 96
3 HeLa 35 50
4 Neuroblastoma 36 39
5 HUVEC 19 22
6 Macrophage-derived cell lines 25 34
7 Other cells and cell lines 279 318


Preparations

# O2k-Publications MitoPedia: Comment O2k Total
1 Living organism 48 236
2 Intact organ 22 36
3 Living cells 1040 1162
4 Permeabilized cells 622 655
5 Permeabilized tissue 1003 1088
6 Homogenate 326 363
7 Isolated mitochondria 1148 1429
8 SMP Submitochondrial particles 10 27
9 Chloroplasts 1 9
10 Enzyme 39 73
11 Oxidase and biochemical oxidation 38 48


Enzymes

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Adenine nucleotide translocase ANT 21 25
2 Complex I CI 444 530
3 Complex II;succinate dehydrogenase CII 392 464
4 Complex III CIII 297 344
5 Complex IV;cytochrome c oxidase CIV 402 472
6 Complex V;ATP synthase CV 216 256
7 mt-Inner membrane transporter 31 43
8 Marker enzyme 54 76
9 Supercomplex 44 60
10 TCA cycle and matrix dehydrogenases Tricarboxylic acid cycle 77 100
11 Uncoupling protein 59 64


Regulation

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 ADP ADP kinetics 146 192
2 ATP production 73 107
3 Aerobic glycolysis 43 83
4 Amino acid 9 19
5 Calcium 95 143
6 Coupling efficiency;uncoupling 77 142
7 Cyt c Cytochrome c 40 53
8 Fatty acid FA substrate kinetics 120 144
9 Flux control 51 81
10 Inhibitor Inhibitor kinetics 127 156
11 Ion;substrate transport 55 95
12 mt-Membrane potential Mitochondrial membrane potential
Questions.jpg


Click to expand or collaps
Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>

.::: Fundamental relationships

» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


100 151
13 Oxygen kinetics 100 137
14 Q-junction effect 12 54
15 Redox state 48 79
16 Substrate Fuel substrate kinetics 178 230
17 Temperature Temperature dependence 64 88
18 Threshold;excess capacity 27 30
19 Uncoupler Uncoupler kinetics 53 68


Coupling-control

# O2k-Publications MitoPedia: Coupling-control states Comment O2k Total
1 P OXPHOS OXPHOS capacity Oxidative phosphorylation capacity, saturating [ADP] 2552 2756
2 R ROUTINE ROUTINE respiration Physiological state, living cells 788 866
3 E ET ET capacity Maximal noncoupled respiration 1807 1903
4 L LEAK LEAK respiration Resting state, non-phosphorylating respiration 2257 2399


Pathway control

# O2k-Publications MitoPedia: Electron-transfer-pathway states Comment O2k Total
1 F F-pathway control state Fatty acid oxidation, level 5 533 632
2 N N-pathway control state NADH-linked, level 4 2174 2310
3 S S-pathway control state Succinate-linked, level 3 1474 1556
4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 135 155
5 DQ Duorquinol-linked, level 2 21 25
6 CIV Complex IV single step Ascorbate & TMPD, level 1 612 639
7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 1365 1416
8 Other 126 142
9 ROX ROX Residual oxygen consumption includes non-mitochondrial respiration 1292 1341


MiPMap combinations - examples

Examples for specific combinations
# O2k-Publications MitoPedia: Comment O2k Total
1 O2k-Publications: Human skeletal muscle 992 1230
2 O2k-Publications: Human heart 657 849
3 O2k-Publications: Skeletal muscle - human vs mouse 36 45
Browse data


O2k-Manuals and protocols and specific instrumental applications

# O2k-Publications MitoPedia: Comment O2k Total
1 Oxygraph-2k 4166 4166
2 TIP2k 41 41
3 O2k-Fluorometry 280 285
4 O2k-pH ISE-Module pH
Questions.jpg


Click to expand or collaps


4 5
5 Nitric Oxide 8 8
6 TPP+ O2k-ISE Module Tetraphenylphosphonium
Questions.jpg


Click to expand or collaps
Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>

.::: Fundamental relationships

» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


49 53
7 Ca2+ O2k-ISE Module 6 6
8 O2k-Spectrophotometer 8 8
9 O2k-Manual 20 21
8 O2k-Protocol 64 80
9 Theoretical background 12 68
10 Instruments;methods 237 359
11 O2k-Fluorometry - Fluorophores 20 20
12 PBI Shredder Homogenate preparation 20 22
# O2k-Publications MitoPedia: Comment O2k Total
1 Twin-Flow respirometry 0 21
2 Separate DatLab applications 29 35