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Difference between revisions of "MitoEAGLE data: blood and cultured cells"

From Bioblast
Line 35: Line 35:
::::# Application of SOPs in experimental studies during Short Term Scientific Missions and feeding of data into the MITOEAGLE data repository.
::::# Application of SOPs in experimental studies during Short Term Scientific Missions and feeding of data into the MITOEAGLE data repository.
::::# Publication of SOPs and study results.
::::# Publication of SOPs and study results.


=== Milestones ===
=== Milestones ===
Line 46: Line 47:
::::# MITOEAGLE data repository for comparative data evaluation, planning of future studies, data mining.
::::# MITOEAGLE data repository for comparative data evaluation, planning of future studies, data mining.
::::# Publication with a set of reference data.
::::# Publication with a set of reference data.
== Feedback WG4 ==
::::# ''Dr. Ali will work within the realms of WG4 (blood and cultured  cells) and potentially WG1 (protocol development) as well as WG5  (dissemination and training). He will participate in data generation,  quality control, and repository efforts of protocols recommended by  these working groups. Dr. Ali will contribute to training workshops and  conferences that aim at defining standard procedures and terminology in  the field of mitochondria physiology.'' - '''[[Ali SS |Sameh S Ali]]'''  (2016).
::::# ''I am very interested in being part of the management committee  either as a MC member for managment tasks or in working group 4  MITOEAGLE data repository for blood cells and cultured cells. I have  experience in analyzing mitochondrial function in different human  tissues as cultured cells and blood cells (also subsets of specific  blood populations, see list of publications), muscle and isolated  mitochondria.  This together with my experience in organizing summer  schools and conferences could be helpful as MC member taking care of  management tasks. However, if you think my expertise is more helpful in  working group 4, I am looking forward to support this working group.'' -  [[Renner-Sattler K|Kathrin Renner-Sattler]] (2016).





Revision as of 15:16, 2 May 2016


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COST Action CA15203 (2016-2021): MitoEAGLE
Evolution-Age-Gender-Lifestyle-Environment: mitochondrial fitness mapping


MitoEAGLE data: blood and cultured cells



WG4

MITOEAGLE data repository for blood cells and clutured cells


MITOEAGLE Working Groups

WG4 Description

Biopsy sampling of human muscle and fat tissue for mitochondrial studies is an invasive approach. More recently measurement of mitochondrial function in human blood cells – as well as temporary cryopreservation (Karabatsiakis 2014 Transl Psychiatry) – has become an attractive and by far less invasive alternative for mitochondrial diagnostics. Mitochondrial function of blood cells was linked with numerous diseases and metabolic conditions such as sepsis, neurodegenerative diseases, depression, hypertension, amyotrophic lateral sclerosis, and early-stage heart failure (e.g. Sjoevall 2013 Crit Care; Karabatsiakis 2014 Transl Psychiatry; Hagl 2014 J Alzheimer Dis). The use of human blood cells will thus predictably widen the applicability of respirometry in human physiology and will provide a significant stimulus for the entire field of mitochondrial medicine.
A key towards achieving comparability among data sets and the applicability of human blood cells for the evaluation of mitochondrial fitness in health and disease is the standardization of the procedures to separate or isolate blood cells, the experimental procedure for the evaluation of mitochondrial respiratory characteristics, and the format for reporting. A consensus on protocols should be reached in WG4, calling for a Workshop right at the start of the COST Action. Depending on the WG4 participants input, cell lines will be defined for which harmonization of datasets should be achieved (Fig. 2).


WG4 Participants

CountryCityContact
ArmeniaYerevanTrchounian K
AustriaInnsbruckTorres-Quesada Omar
AustriaInnsbruckGarcia-Souza Luiz F
AustriaInnsbruckDoerrier Carolina
AustriaInnsbruckKarabatsiakis Alexander
AustriaInnsbruckCardoso Luiza HD
AustriaInnsbruckHoppel Florian
AustriaInnsbruckGnaiger Erich
AustriaInnsbruckFischer Christine
AustriaInnsbruckMeszaros Andras T
BelgiumLiegeVotion Dominique-Marie
BelgiumNamurRenard P
BelgiumNamurDetraux Damien
BelgiumLeuvenBird Matthew
BelgiumNamurArnould Thierry
Bosnia and HerzegovinaTuzlaJusic Amela
Bosnia and HerzegovinaTuzlaHajrulahovic Anesa
BrazilSao PauloDominguez-Amorocho OA
BrazilSao PauloAlencar Mayke Bezerra
BrazilSão PauloCrispim Marcell
BrazilSao PauloVerdaguer Ignasi Bofill
CroatiaZagrebRubelj Ivica
Czech RepublicPragueHansikova Hana
Czech RepublicPilsenMarkova Michaela
Czech RepublicPilsenKripnerova M
Czech RepublicPragueFisar Zdenek
Czech RepublicPilsenKuncova J
Czech RepublicPrague 4Bajzikova Martina
Czech RepublicPragueElkalaf Moustafa
Czech RepublicPraguePecina Petr
Czech RepublicHradec KraloveVernerova Andrea
Czech RepublicHradec KraloveMaseko Tumisang Edward
Czech RepublicPragueMracek Tomas
Czech RepublicVestecZobalova Renata
Czech Republic and AustraliaPrague and SouthportNeuzil Jiri
Czech repHradec KraloveFalaye T
DenmarkMalovHey-Mogensen M
DenmarkHvidovreNehlin Jan O
DenmarkAarhusRattan Suresh IS
DenmarkCopenhagen NMortensen OH
DenmarkCopenhagenRasmussen LJ
DenmarkCopenhagenDesler C
EgyptCairoAbdel-Rahman Engy Ali
EgyptCairoAli Sameh S
EstoniaTartuGrellier T
EstoniaTallinnKlepinina Lyudmila
EstoniaTallinnTruu Laura
FinlandTurkuStier Antoine
FinlandHelsinkiPirinen E
FinlandJyvaeskylaeLehti Maarit
FranceBordeaux cedexMourier A
FranceParisPetit Patrice X
FranceBronRizwan Alam M
GermanyGießenSilaidos Carmina
GermanyDüsseldorfPrigione Alessandro
GermanyMunichJastroch M
GermanyFreisingFromme Tobias
GermanyBiberach an der RißNold V
GermanyHamburgSinger Dominique
GermanyMainzVujacic-Mirski Ksenija
GermanyFreisingSchoettl T
GermanyDuesseldorfEckers A
GermanyUlmSchaefer PM
GermanyUlmCalzia Enrico
GermanyMagdeburgVieira Ligo Teixeira Camila
GermanyMainzKalinovic S
GermanyFreising-WeihenstephanMusiol Eva
GermanyUlmHartmann C
GermanyFreisingKlingenspor Martin
GermanyLeipzigOst Mario
GermanyRegensburgRenner-Sattler Kathrin
GermanyNeuherbergBorchard Sabine
GermanyDuesseldorfPiel Sarah
GermanyFreisingKeppner Gloria
GermanyUlmKolassa Iris
GermanyGiessenEckert Gunter P
GreeceAthensTrougakos Ioannis P
HungaryBudapestTretter Laszlo
HungaryBudapestKomlodi Timea
HungaryDebrecenVerebne Tar K
IrelandDublinKaravyraki Marilena
IrelandDublinPorter Richard K
IrelandSligoMurphy J
IsraelRishon Le ZionHachmo Yafit
IsraelZrifinSova Marina
IsraelJerusalemSaada Reisch Ann
ItalyBolognaPaterlini S
ItalyBolzano/BozenVolani Chiara
ItalyAnconaBattino Maurizio
ItalyBolognaPorcelli AM
ItalyRomeScatena Roberto
ItalyBolognaGasparre G
ItalyMilanoBottoni P
ItalyVeronaCalabria Elisa
ItalyPadovaFernandez-Vizarra Erika
ItalyBolognaGenova Maria Luisa
ItalyBolzanoPichler Irene
ItalyBolzanoCastelo Rueda Maria Paulina
JapanSapporoShirakawa R
LatviaRigaMakarova Elina
LatviaRigaKidere Dita
MalaysiaKuala LumpurAbdul Karim Norwahidah
MaltaMsidaVella Joanna
NetherlandsWageningenKeijer Jaap
NetherlandsGroningenRots MG
NetherlandsNijmegenKoopman Werner JH
NorwayOsloLund Jenny
NorwayOsloNikolic N
NorwayOsloRustan AC
NorwayBergenTronstad Karl Johan
NorwayOsloEide L
PalestineRamallahStiban Johnny
PolandWarsawDymkowska Dorota
PolandPoznańLudziejewska A
PolandPoznanSwiniuch Daria
PolandLodzWatala Cezary
PolandWarsawKampa Rafal Pawel
PolandWarsawSek Aleksandra
PolandLodzLabieniec-Watala Magdalena
PolandPoznanRybacka-Mossakowska Joanna
PolandLodzSiewiera Karolina
PolandWarsawWasilewski M
PolandKrakowKaczara P
PolandPoznanMichalak Slawomir
PortugalPortoCarrageta D
PortugalPortoMagalhaes Jose
PortugalCoimbraPalmeira Carlos
PortugalPortoMartins Ana Dias
PortugalPortoCrisostomo Luis
PortugalPortoMoreira Bruno P
PortugalCantanhedeBento Guida Jose Freitas
PortugalPortoOliveira Pedro Fontes
PortugalCovilhãDias Tania R
PortugalCoimbraCarvalho Eugenia
PortugalCoimbraPereira Susana P
PortugalPortoBernardino RL
PortugalPortoAlves Marco G
PortugalCantanhedePinho Sonia A
PortugalPortoBeleza Jorge
PortugalCatanhedePereira da Silva Grilo da Silva Filomena
Republic of KoreaDaejeonPark SH
Republic of KoreaYuseong-gu DaejeonQuang Don T
Republic of SerbiaBelgradeKrako Jakovljevic Nina
Republic of SerbiaBelgradePavlovic Kasja
RomaniaTimisoaraBetiu AM
RomaniaTimisoaraAvram Vlad F
RomaniaTimisoaraMuntean Danina M
RomaniaTimisoaraLighezan R
RomaniaTimisoaraDanila Maria-Daniela
RomaniaTimisoaraLelcu Theia
RussiaMoscowKrylova T
RussiaMoscowItkis YS
RussiaMoscowTsygankova P
Saudi ArabiaGizaKotb IA
SerbiaBelgradMarkovic Ivanka
SerbiaBelgradeMisirlic-Dencic S
SerbiaBelgradeIvanovic Tijana
SerbiaBelgradeJeremic M
SerbiaBelgradeIsakovic A
SerbiaBelgradeVukojevic M
SlovakiaBratislavaUkropec J
SlovakiaKošiceCizmarova Beata
SlovakiaBratislavaUkropcova B
SlovakiaBratislavaSumbalova Zuzana
SlovakiaBratislavaMaderova D
SlovakiaBratislavaNemec Michal
SloveniaLjubljanaPirkmajer Sergej
SloveniaLjubljanaMars T
SloveniaLjubljanaKopitar-Jerala Natasa
SpainArmilla (Granada)Fernandez-Ortiz Marisol
SpainBarcelonaSmolders V
SpainBarcelonaGil J
SpainMadridCadenas S
SpainValenciaVictor Victor Manuel
SpainOurenseReboredo-Rodriguez Patricia
SpainLleidaGonzalo Hugo
SpainBarcelonaGonzalez Casacuberta I
SpainValenciaCasado Pinna Marta
SpainGranadaQuiles JL
SpainValenciaBorras Consuelo
SpainLleidaNogueras L
SpainBarcelonaJuarez D
SpainA CoruñaMayan MD
SpainBarcelonaDahdah Norma Ramon
SpainBarcelonaZorzano Antonio
SpainMadridDe los Rios C
SpainValenciaFuertes Agudo Marina
SpainBarcelonaGama Perez Pau
SpainSevillaMuntane Jordi
SpainArmilla, GranadaEscames Germaine
SpainMadridCano-Abad MF
SpainSevillaBustos Matilde
SpainSalamancaAlmeida Angeles
SpainA CoruñaBlanco FJ
SpainBarcelonaTura Ceide O
SpainMadridMonsalve Maria
SpainBarcelonaHyrossova Petra
SpainMadridLopez MG
SpainBarcelonaArago Marc
SwedenSödertäljeAlfaro-Moreno E
SwedenLundWesterlund E
SwedenLundSimon Serrano Sonia
SwedenLundKarlsson M
SwedenLundLeffler M
SwedenLinköpingFontes-Oliveira CC
SwedenLundElmer Eskil
SwedenLundAbliva
SwedenLundChamkha Imen
Sweden, SELundAasander Frostner Eleonor
SwitzerlandLausanneZanou Nadege
SwitzerlandGenevaMartinou JC
The NetherlandsBT AmsterdamWuest Rob CI
TurkeyAnkaraTuncay Erkan
TurkeyIstanbulBaykal AT
TurkeyTekirdagAral Cenk
TurkeyIzmirAydin HH
TurkeyAnkaraEngin Ayse Basak
USAFayettevilleRao RR
USAPhiladelphiaKilbaugh Todd
USAIowa CityBuettner Garry R
USAOrlandoCoen Paul M
USABaton RougeIrving Brian A
USAFayettevilleIyer Shilpa
USAPhiladelphiaStarr Jonathan
USASt LouisWelch R
USAPhiladelphiaJanowska Joanna
United KingdomLeicesterMoisoi Nicoleta
United KingdomBirminghamThakker A
United KingdomStoke-on-TrentMcStay Gavin P
United KingdomBirminghamJoanisse S
United KingdomOxfordMakrecka-Kuka Marina
United KingdomBrightonMoore Anthony L
UruguayMontevideoRadi R


WG4 Management

Tasks

  1. Kick-off meeting to develop a working plan for the establishment of consensus protocols, reporting schemes, and the assignment of specific study tasks.
  2. Development of SOPs for cell separation.
  3. Development of laboratory protocols for individual blood cell types (and other cell types) for mitochondrial studies on intact and permeabilized cells.
  4. Application of SOPs in experimental studies during Short Term Scientific Missions and feeding of data into the MITOEAGLE data repository.
  5. Publication of SOPs and study results.


Milestones

  1. Consensus on protocols, reporting schemes and work assignments.
  2. Completed SOPs for cell preparation & laboratory protocols.
  3. Application study finished and data transmitted to MITOEAGLE data repository.
  4. Publication finished.

Deliverables

  1. SOPs for blood cell separation and respirometric characterisation open for the research community.
  2. MITOEAGLE data repository for comparative data evaluation, planning of future studies, data mining.
  3. Publication with a set of reference data.

Feedback WG4

  1. Dr. Ali will work within the realms of WG4 (blood and cultured cells) and potentially WG1 (protocol development) as well as WG5 (dissemination and training). He will participate in data generation, quality control, and repository efforts of protocols recommended by these working groups. Dr. Ali will contribute to training workshops and conferences that aim at defining standard procedures and terminology in the field of mitochondria physiology. - Sameh S Ali (2016).
  2. I am very interested in being part of the management committee either as a MC member for managment tasks or in working group 4 MITOEAGLE data repository for blood cells and cultured cells. I have experience in analyzing mitochondrial function in different human tissues as cultured cells and blood cells (also subsets of specific blood populations, see list of publications), muscle and isolated mitochondria. This together with my experience in organizing summer schools and conferences could be helpful as MC member taking care of management tasks. However, if you think my expertise is more helpful in working group 4, I am looking forward to support this working group. - Kathrin Renner-Sattler (2016).


Projects in progress

» MitoFit-Bloodcells
» MiPMap

Next steps